cluster # 5173

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Oryza sativa
cluster # 5173 cluster # 5173 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5173#0 length = 931 sequences # 3

consensusID : consensus_5173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 931
fasta sequence

                              [GCTTCATGGTTAAGTATGTTGGGGACGACGAGGAGCAGAACGGCTTGCAGATGACGGGCCTGAATCTGATGGACAAGACCTTGGCAGTTCGGGGAGCTCGAATTGCCTTCAGCATTTGGGATGTGGCAGGAGACAGCCAGTTCCTCGACCACGTCCCGATCGCGTGTAAGGACGCCGTGGCGATCTTGTACATGTTCGATCTCACGAGCCGGTGCACGCTTACTAATGTTATAGATTGGTATGAGAGGGCAAGGAAATGGAATAAGACGGCTATTCCAATCCTAATTGGGACGAAGTTTGATGACTTCGCTCAGCTTCCTCTTGAGATGCAATGGACCATCGTTAACGAG-GCCAGGGCATACGCGAG-AGCGATGAAGGCGACCCTCTTCTTCTCCAGCTCGACGCACAACATCAACGTGAACAAGATCTTCAAGTTCATCACGGCCAAGCTCTTCAACCTGCCGTGGACGGTGGAGCGCAACCTCACCGTCGGCGAGCCCATCATAGACTTCTGAAGACTCTACACCCTTACACTGACAAAATGCTAGGC-AAAAAAACGTACACGAGCCCTTCCTTCCCTCCCCTTCGTCGTCTTCCTCCTGACCTTTCTCTCCCGGTAATGGAGGCCGGCCATGGCCATGGCTGAGCAGAACTGAGCTCTTGCATGTACGTATAGGTGAAAGAAAAAAGAAAAAAAAAAGAAAGAAAAAGGATCAAGTTGAGTTCGTCGTTGTCGAGGTGTTATCCCTTCCCTTGTGCAGTGCAGGCAAGGGCAGAAGAGGAAACCGTGAGATGTTGTCTGTAACCCTCGTCACAGTGTATAGTAGAGTAGGAGTTTAACCGATCCATGTAATATAATCCTCACCGTTTTTTTAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK071154             [GCTTCATGGTTAAGTATGTTGGGGACGACGAGGAGCAGAACGGCTTGCAGATGACGGGCCTGAATCTGATGGACAAGACCTTGGCAGTTCGGGGAGCTCGAATTGCCTTCAGCATTTGGGATGTGGCAGGAGACAGCCAGTTCCTCGACCACGTCCCGATCGCGTGTAAGGACGCCGTGGCGATCTTGTACATGTTCGATCTCACGAGCCGGTGCACGCTTACTAATGTTATAGATTGGTATGAGAGGGCAAGGAAATGGAATAAGACGGCTATTCCAATCCTAATTGGGACGAAGTTTGATGACTTCGCTCAGCTTCCTCTTGAGATGCAATGGACCATCGTTAACGAG GCCAGGGCATACGCGAG AGCGATGAAGGCGACCCTCTTCTTCTCCAGCTCGACGCACAACATCAACGTGAACAAGATCTTCAAGTTCATCACGGCCAAGCTCTTCAACCTGCCGTGGACGGTGGAGCGCAACCTCACCGTCGGCGAGCCCATCATAGACTTCTGAAGACTCTACACCCTTACACTGACAAAATGCTAGGC AAAAAAACGTACACGAGCCCTTCCTTCCCTCCCCTTCGTCGTCTTCCTCCTGACCTTTCTCTCCCGGTAATGGAGGCCGGCCATGGCCATGGCTGAGCAGAACTGAGCTCTTGCATGTA                                                                                                                                                                                                                                                                      ]
[+] EMBL CA766074             [                                                                                                                                                                                                                                                                                                                                                gtgagccggACGAGNACAAGGGGATACGCGAGNAGCGATGAAGGCGACCCTCTTCTTCTCCAGCTCGACGCACAACATCAACGTGGACAAGATCTTCAAGTTCATCACGGCCAAGCTCTTCAACCTGCCGTGGACGGTGGAGCGCAACCTCACCGTCGGCGAGCCCATCATAGACTTCTGAAGACTCTACACCCTTACACTGACAAAATGCTAGGCAAAAAAAACGTACACGAGCCCTTCCTTCCCTCCCCTTCGTCGTCTTCCTCCTGACCTTTCTCTCCCGGTAATGGAGGCCGGCCATGGCCATGGCTGAGCAGAACTGAGCTCTTGCATGTACGTATAGGTG                                                                                                                                                                                                                                                            ]
[+] EMBL AU058001             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTGACAAAATGCTAGGC AAAAAAACGTACACGAGCCCTTCCTTCCCTCCCCTTCGTCGTCTTCCTCCTGACCTTTCTCTCCCGGTAATGGAGGCCGGCCATGGCCATGGCTGAGCAGAACTGAGCTCTTGCATGTACATATAGGTGAAAGAAAAAAGAAAAAAAAAAGAAAGAAAAAGGATCAAGTTGAGTTCGTCGTTGTCGAGGTGTTATCCCTTCCCTTGTGCAGTGCAGGCAAGGGCAGAAGAGGAAACCGTGAGATGTTGTCTGTAACCCTCGTCACAGTGTATAGTAGAGTAGGAGTTTAACCGATCCATGTAATATAATCCTCACCGTTTTTTTAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5173#0
GCTTCATGGTTAAGTATGTTGGGGACGACGAGGAGCAGAACGGCTTGCAGATGACGGGCC
TGAATCTGATGGACAAGACCTTGGCAGTTCGGGGAGCTCGAATTGCCTTCAGCATTTGGG
ATGTGGCAGGAGACAGCCAGTTCCTCGACCACGTCCCGATCGCGTGTAAGGACGCCGTGG
CGATCTTGTACATGTTCGATCTCACGAGCCGGTGCACGCTTACTAATGTTATAGATTGGT
ATGAGAGGGCAAGGAAATGGAATAAGACGGCTATTCCAATCCTAATTGGGACGAAGTTTG
ATGACTTCGCTCAGCTTCCTCTTGAGATGCAATGGACCATCGTTAACGAGGCCAGGGCAT
ACGCGAGAGCGATGAAGGCGACCCTCTTCTTCTCCAGCTCGACGCACAACATCAACGTGA
ACAAGATCTTCAAGTTCATCACGGCCAAGCTCTTCAACCTGCCGTGGACGGTGGAGCGCA
ACCTCACCGTCGGCGAGCCCATCATAGACTTCTGAAGACTCTACACCCTTACACTGACAA
AATGCTAGGCAAAAAAACGTACACGAGCCCTTCCTTCCCTCCCCTTCGTCGTCTTCCTCC
TGACCTTTCTCTCCCGGTAATGGAGGCCGGCCATGGCCATGGCTGAGCAGAACTGAGCTC
TTGCATGTACGTATAGGTGAAAGAAAAAAGAAAAAAAAAAGAAAGAAAAAGGATCAAGTT
GAGTTCGTCGTTGTCGAGGTGTTATCCCTTCCCTTGTGCAGTGCAGGCAAGGGCAGAAGA
GGAAACCGTGAGATGTTGTCTGTAACCCTCGTCACAGTGTATAGTAGAGTAGGAGTTTAA
CCGATCCATGTAATATAATCCTCACCGTTTTTTTAAAAAAANAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

clustalw multiple alignements is not computed in this case