These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence [TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGACGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGCGCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAATCTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACC-CGAGCAAAGCTACTAGTATACTGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATAGGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA] [+] EMBL CF338371 [TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGACGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGCGCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAATCTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACC CGAGCAAAGCTACTAGTATACTGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATAGGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGG ] [+] EMBL CB683201 [ AGCGCCTTGCTGGCGACCAGAGCGTCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGCGCGTTGCAGCCCTGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAATCTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACCTCGAGCAAAGCTACTAGTATACTGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATAGGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA] consensusID : consensus_5199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 142 fasta sequence [ATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTCCCG] [+] EMBL CF308850 [ATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5199#0 TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGA 60 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGC 120 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 GCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAAT 180 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACCCGAGCAAAGCTACTAGTATAC 240 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 TGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATA 300 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 GGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATG 360 consensus_5199#1 ----------------------------------ATTTGGGCATCCGGCTCCCTAGAATG 26 ************************** consensus_5199#0 CATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA- 419 consensus_5199#1 CATATTACTACTAATTGTGCATTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 86 ****************************** * * * * * * * * consensus_5199#0 -------------------------------------------------------- consensus_5199#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTCCCG 142 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||