These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAGGGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCTTGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGACTTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAATCCCAGATATGGG] [+] EMBL CA762828 [TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAGGGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCTTGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGACTTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAATCCCAGATATGGG] [+] EMBL CA762829 [TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAGGGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCTTGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGACTTGGGCTTTATAACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCCATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGAACACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGGTCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGGCACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAAATCAGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGACGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGTGACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGCAATCCCAGATATGGG] consensusID : consensus_5218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGGGGGTTAAATGAAACACAAAAATGATCCGGAGTGCGCAGGAGTACTGGAGTATCTCCATTGGATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTATAACAACTCACGGGAACACACTGGGCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCCGTGGGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGACACCTGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGGCCATGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGGCACCTGTGCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACTAGACCAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCAGTAGCTATAACCGGGCGTATCTGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACAGTCCCGCCGGGGACACGATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGGACCC] [+] EMBL CA761850 [TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGGGGGTTAAATGAAACACAAAAATGATCCGGAGTGCGCAGGAGTACTGGAGTATCTCCATTGGATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTATAACAACTCACGGGAACACACTGGGCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCCGTGGGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGACACCTGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGGCCATGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGGCACCTGTGCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACTAGACCAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCAGTAGCTATAACCGGGCGTATCTGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACAGTCCCGCCGGGGACACGATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGGACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5218#0 TTTTTTTTTTTTTGGAAAGACAAATAAATTCCCATGTTCTTGACACCGGTCTAAATATAG 60 consensus_5218#1 TTTTTTTTTTTTTGAAAAGACAAATAAATTCCCATGTTCTTGCCACGGGTCTAAATATGG 60 ************** *************************** *** *********** * consensus_5218#0 GGGTTAAAGACGACACAAAAATGATGGGATGTGCTCGAGGAGTACTGAGAGTATCTCCCT 120 consensus_5218#1 GGGTTAAATGAAACACAAAAATGATCCGGAGTGCGC-AGGAGTACTG-GAGTATCTCCAT 118 ******** ************* * **** * ********** ********** * consensus_5218#0 TGGATGAATCTGGTGTCGCCCTTTCTAGGTGAAGCTTATCGAGAACTCATGTGGACAGAC 180 consensus_5218#1 TGGATGAATCTTATGTCCCCCCTTCTAGGTGAAGGTTAT-AACAACTCACGGGAACACAC 177 *********** **** *** ************ **** * ****** * * *** ** consensus_5218#0 TTGGGCTTTATA-ACCGGTATGTACAAAGACGCTGCTATGAGGACCCCTAGGAACTGCCC 239 consensus_5218#1 TGGGCTTTTATACACCAGTATGTACAAAGAGCCTGCTATGAGGACCCCTAGGAACTGCCC 237 * ** ****** *** ************* **************************** consensus_5218#0 ATGGGTGCGGAAATGAAACATACAGTTATCGGTGATGTCATTGATAACGAATTGCGA-AC 298 consensus_5218#1 GTGGGTGCGGAAAAGAAACATATCTCTATCGGTGTTCTCATTGACAACGAACTGCGAGAC 297 ************ ******** ******** * ******* ****** ***** ** consensus_5218#0 ACCTGTTGACCTTGCAGGCCTCCTTCATGCGCGTTAATTAACCCGAGGCATTGGCCTCGG 358 consensus_5218#1 ACCTGTTGACCTTGCAGGCCATGTTCAAGCGCTTGAATGAACCCCAGGCATTGTCCTCGG 357 ******************** **** **** * *** ***** ******** ****** consensus_5218#0 TCCTGCACATCACGTTCTCATCAATGTGAGGTTGGTATTTGACCCCTATAGAGTGCAAGG 418 consensus_5218#1 CCATGCCCATCACGTTCGTATCGATGCGACGTTGGCATTGCGCCCCTATTGAAGTCAAGG 417 * *** ********** *** *** ** ***** *** ******* ** ***** consensus_5218#0 CACATGAAGAGCGGAACAGCACTGGATTCCATCACTAGGACATTGGGGATGCTGAA-ATC 477 consensus_5218#1 CACCTGT-GCGCGGACCCGCGCTGGTCTCGAGCACGGGGACAATGGGGATACCCATCACT 476 *** ** * ***** * ** **** ** * *** ***** ******* * * * consensus_5218#0 AGAGGAGTGGTGGGGATGAAGGCTATGTGGTTGAACCTGTGCACGATTCTAAGTAATGGA 537 consensus_5218#1 AGACCAGCGACGGGCCTGAAGGCCATGTCCTTGAACCTGGTCA--GTAGCTATAACCGGG 534 *** ** * *** ******* **** ********* ** * * * ** consensus_5218#0 CGTATGTGCGAGGCCTAACGGAGGGATAGCGGATGGGGAAGAGATGATACGTCCCCTTGT 597 consensus_5218#1 CGTATCTGCGGGGGCAAAGGAGAGGATAGGGNATGGGGGAGGGAAAACA-GTCCCGCCGG 593 ***** **** ** * ** * ****** * ****** ** ** * * ***** * consensus_5218#0 GACGATCCTAACCATTCACACCTAGCCAGACATTCTAACAAAAGGGGTGGTCTGTAACGC 657 consensus_5218#1 GGACACGATAACGATTTCGACCTAGCAGAATAGCCTACCCAAGAGGCGCGGCTATACCGG 653 * * **** *** ******* * * *** * ** ** * ** ** ** consensus_5218#0 AATCCCAGATATGGG 672 consensus_5218#1 ACCC----------- 657 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||