These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence [TCTTTTTTTTTTTCAAAGTATGTGCCAAAATTCATTTCTCCTGAGAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAGAAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGTTTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATTGGAAGCCATGGCACTCCAAAATCCTATCCAGTTGAAAGAAACTTCGGTCATC] [+] EMBL CB656267 [TCTTTTTTTTTTTCAAAGTATGTGCCAAAATTCATTTCTCCTGAGAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAGAAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGTTTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATTGGAAGCCATGGCACTCCAAAATCCTATCCAGTTGAAAGAAACTTCGGTCATC] [+] EMBL CB647970 [ AAAGTATGTGCCAAAATTCATTTCTCTTGAGAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAGAAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGTTTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATTGGAAGCCATGGCACTCC ] consensusID : consensus_5233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCAAATTCAAAAGGAAATGAATAAAAATCCCTACTCACATTTGAAGTGATCCAGTAAAAAAGGAGGCAATATTCTTGGACAGGAATTTCAAAAGTATGTGCCAAAATTCATTTCTCTTGAGAAATCATCTGACAATGTTAGATTGTTATTTTGGTGCCGGTCCATCACTACCTTCGTGAGAAAAATTTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAATCCTGAATCTTGTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGATAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATGGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTGTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTCTTGAAAGGAGGTTT] [-] EMBL CB679962 [CCAAATTCAAAAGGAAATGAATAAAAATCCCTACTCACATTTGAAGTGATCCAGTAAAAAAGGAGGCAATATTCTTGGACAGGAATTTCAAAAGTATGTGCCAAAATTCATTTCTCTTGAGAAATCATCTGACAATGTTAGATTGTTATTTTGGTGCCGGTCCATCACTACCTTCGTGAGAAAAATTTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAATCCTGAATCTTGTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGATAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATGGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTGTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTCTTGAAAGGAGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5233#0 ------------------------------------------------------------ consensus_5233#1 CCAAATTCAAAAGGAAATGAATAAAAATCCCTACTCACATTTGAAGTGATCCAGTAAAAA 60 consensus_5233#0 ------------TCTTTTTTT----TTTTCAAAGTATGTGCCAAAATTCATTTCTCCTGA 44 consensus_5233#1 AGGAGGCAATATTCTTGGACAGGAATTTCAAAAGTATGTGCCAAAATTCATTTCTCTTGA 120 **** *** ************************** *** consensus_5233#0 GAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAG 104 consensus_5233#1 GAAATCATCTGACAATGTTAGATTGTTATTTTGGTGCCGGTCCATCACTACCTTCGTGAG 180 ****** ************* ********************************* **** consensus_5233#0 AAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAG 164 consensus_5233#1 AAAAATTTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAG 240 ****** ***************************************************** consensus_5233#0 AAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCT 224 consensus_5233#1 AAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAATCCTGAATCTTGT 300 *********************************************** ********** * consensus_5233#0 AGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTT 284 consensus_5233#1 AGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTT 360 ************************************************************ consensus_5233#0 GAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGG 344 consensus_5233#1 GAACCTAGAGTACAGGAAAACTCCAGATAGAGCAACGCCAGTTCCAAGGGCATTAATAGG 420 ************************** ********************************* consensus_5233#0 TGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACA 404 consensus_5233#1 TGAAATGGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACA 480 ****** ***************************************************** consensus_5233#0 GTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTG 464 consensus_5233#1 GTTGGCAACAGAATGGGTCACAGGTGATACTGTAGCCAATAAACTATAAGAAACCTGTTG 540 ******************************* **************************** consensus_5233#0 GTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAAC 524 consensus_5233#1 GTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAAC 600 ************************************************************ consensus_5233#0 TCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGG 584 consensus_5233#1 TCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGG 660 ************************************************************ consensus_5233#0 GGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGT 644 consensus_5233#1 GGCAGATAATAAAAATGACATAACAGTCATTCTTGAAAGGAGGTTT-------------- 706 ******************************* * ** * ******* consensus_5233#0 TTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATT 704 consensus_5233#1 ------------------------------------------------------------ consensus_5233#0 GGAAGCCATGGCACTCCAAAATCCTATCCAGTTGAAAGAAACTTCGGTCATC 756 consensus_5233#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||