These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [CTTTTTGCCACATTTAGATGTGTAATTAACTTTTTACCACTGGACCCACATGTCATAGATACATGTGGATCCACATGTCATTGAGATATGAGTGACAAATAGTTATTTGCCAAATCTAAAAGTGGCAAATAGTTAAACCCCCACTATGCCATCCCAATGCAGCATTGCACACACTGCCACCCCAAACAGCAGTTATAGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGTAAAGTGTTTCGCAAGCACTCTCATAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGAGAACAAGGTTGCATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGACTTTAACTCTGTTGCTTTCCTTT] [+] EMBL CB659617 [CTTTTTGCCACATTTAGATGTGTAATTAACTTTTTACCACTGGACCCACATGTCATAGATACATGTGGATCCACATGTCATTGAGATATGAGTGACAAATAGTTATTTGCCAAATCTAAAAGTGGCAAATAGTTAAACCCCCACTATGCCATCCCAATGCAGCATTGCACACACTGCCACCCCAAACAGCAGTTATAGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGTAAAGTGTTTCGCAAGCACTCTCATAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGAGAACAAGGTTGCATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGACTTTAACTCTGTTGCTTTCCTTT] consensusID : consensus_5258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [GAACCTAACTTATCTTTTAACAGACATGATTTTTACACAACATCCAAGACATCATGTGAGATAAGTACATTAAATCTAAGTATGAAAGAGTGATGTTTGCATTGAAAAAGTAATGTATAATACTATTTTTTTTTTCTTAATGATATAGAGTTTATGGAAACTATGTGTAGTGTCTTGGGTTGAGACTGGCACTATGCCATCCCAATGCAGCATTGCACCCACACCACCCCAAACGGCAGTTATAGACGCGAAACACCGTGATGTTCAACAGTCACCACCCCGGTTAGCTACTTTGCTTCACTTACAAAAAGGACACCCATTATGGTTCTGGGTATCGAAGTCTCTGGGCAAAATGTGAGAACACCTGTGGACTCAGGGAACCAAAGGCTCTTGGACAAAAAGTGAGGCGCCTTGGACAAAACGTGTAGGAGAGGACCAGAGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCTGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTCAATCCATCGTAAAGTGTTTCGCAAGCACTCTCGTAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTTGGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGCCTCCATTACCCATGTGATGCCAGCAAAGGCTTCTTACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTCCCCAGTGACTTTAACTCT] [+] EMBL CB629559 [GAACCTAACTTATCTTTTAACAGACATGATTTTTACACAACATCCAAGACATCATGTGAGATAAGTACATTAAATCTAAGTATGAAAGAGTGATGTTTGCATTGAAAAAGTAATGTATAATACTATTTTTTTTTTCTTAATGATATAGAGTTTATGGAAACTATGTGTAGTGTCTTGGGTTGAGACTGGCACTATGCCATCCCAATGCAGCATTGCACCCACACCACCCCAAACGGCAGTTATAGACGCGAAACACCGTGATGTTCAACAGTCACCACCCCGGTTAGCTACTTTGCTTCACTTACAAAAAGGACACCCATTATGGTTCTGGGTATCGAAGTCTCTGGGCAAAATGTGAGAACACCTGTGGACTCAGGGAACCAAAGGCTCTTGGACAAAAAGTGAGGCGCCTTGGACAAAACGTGTAGGAGAGGACCAGAGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCTGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTCAATCCATCGTAAAGTGTTTCGCAAGCACTCTCGTAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTTGGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGCCTCCATTACCCATGTGATGCCAGCAAAGGCTTCTTACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTCCCCAGTGACTTTAACTCT] consensusID : consensus_5258#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCANAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGNAAANTGNTTCGNAAGCANTCTCANAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTATAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGNATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGANAACAAGGTTGNATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGNCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGA] [-] EMBL AU094849 [TTTTTTTTTTTTTTTTTTTTTTTGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCANAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGNAAANTGNTTCGNAAGCANTCTCANAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTATAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGNATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGANAACAAGGTTGNATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGNCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5258#0 -------------------------------------------------CTTTTTGCCAC 11 consensus_5258#2 ------------------------------------------------------------ consensus_5258#1 GAACCTAACTTATCTTTTAACAGACATGATTTTTACACAACATCCAAGACATCATGTGAG 60 consensus_5258#0 ATTTAGATGTGTAATTAACTTTTTACCACTGGACCCACATGTCATAGATACATGTGGATC 71 consensus_5258#2 ------------------------------------------------------------ consensus_5258#1 ATAAGTACATTAAATCTAAGTATGAAAGAGTGATGTTTGCATTGAAAAAGTA-ATGTATA 119 consensus_5258#0 CACATGTCATTGAGATATGAGTGACAAATAGTTATTTGCCAAATCTAAAAGTGGCAAATA 131 consensus_5258#2 ------------------------------------------------------------ consensus_5258#1 ATACTATTTTTTTTTTCTTAATGATATAGAGTTTATGGAAACTATGTGTAGTGTCTTGGG 179 consensus_5258#0 GTTAAACCCCCACTATGCCATCCCAATGCAGCATTGCACACACTGCCACCCCAAACAGCA 191 consensus_5258#2 -------------------------------------------TTTTTTTTTTTTTTTTT 17 consensus_5258#1 TTGAGACTGGCACTATGCCATCCCAATGCAGCATTGCACCCAC-ACCACCCCAAACGGCA 238 consensus_5258#0 GTTATAGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTT 251 consensus_5258#2 TTTTTTGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTT 77 consensus_5258#1 GTTATAGACGCGAAACACCGTGATGTTCAACAGTCACCACCCCGGTTAGCTACTTTGCTT 298 ** * *** **** ************** ****************************** consensus_5258#0 CAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATG 311 consensus_5258#2 CAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATG 137 consensus_5258#1 CACTTACAAAAAGGACAC---CCATTATGGTTCTGGGTATCGAAGTCTCTGGGCAAAATG 355 ** *** ******** * ***** ********************** ********* consensus_5258#0 TGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTG-CAAAAAGTGAGACGCCTTGG 370 consensus_5258#2 TGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTG-CAAAAAGTGAGACGCCTTGG 196 consensus_5258#1 TGAGAACACCTGTGGACTCAGGGAACCAAAGGCTCTTGGACAAAAAGTGAGGCGCCTTGG 415 ******** ******************* ******** * *********** ******** consensus_5258#0 ACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTC 430 consensus_5258#2 ACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTC 256 consensus_5258#1 ACAAAACGTGTAGGAGAGGACCAGAGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTC 475 ************************ *********************************** consensus_5258#0 ACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCAGAGCTTCCCGTAATGCATCCT 490 consensus_5258#2 ACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCANAGCTTCCCGTAATGCATCCT 316 consensus_5258#1 ACCTAGCCTCTGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGTAATGCATCCT 535 ********** ************* ********** *** ******************** consensus_5258#0 CCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGTAAAGTGTTTCGCAAGCACTCT 550 consensus_5258#2 CCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGNAAANTGNTTCGNAAGCANTCT 376 consensus_5258#1 CCATCTCAGAGTTCCCTGGATCCAACTTCAATCCATCGTAAAGTGTTTCGCAAGCACTCT 595 **************************** ********* *** ** **** ***** *** consensus_5258#0 CATAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTCAGCCAGTCAG 610 consensus_5258#2 CANAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTA-TAGGCCTTCAGCCAGTCAG 435 consensus_5258#1 CGTAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTTGGCCAGTCAG 655 * ************************************* ******** ********* consensus_5258#0 GCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGAT 670 consensus_5258#2 GCCGCAATTTCCTGNATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGAT 495 consensus_5258#1 GCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGCCTCCATTACCCATGTGAT 715 ************** ************************** ***** *********** consensus_5258#0 GCCAGCAAAGGCTTCTATTTGAGAACAAGGTTGCATCATCAGGGTAAAGGTCCACTGCCT 730 consensus_5258#2 GCCAGCAAAGGCTTCTATTTGANAACAAGGTTGNATCATCAGGGTAAAGGTCCACTGCCT 555 consensus_5258#1 GCCAGCAAAGGCTTCTT------------------------------------------- 732 **************** consensus_5258#0 GACTGTAGAATCCTGTTGC-AGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGT 789 consensus_5258#2 GACTGTAGAATCCTGTTGNCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGT 615 consensus_5258#1 -ACTGTAGAATCCTGTTGC-AGAAAGATAATCCTTTTTCTCGACCGCCTTATTCCCCAGT 790 ***************** ********************************* ****** consensus_5258#0 GACTTTAACTCTGTTGCTTTCCTTT 814 consensus_5258#2 GA----------------------- 617 consensus_5258#1 GACTTTAACTCT------------- 802 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||