These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGAGAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCTCGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCACAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATTCAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAAATATGTTTAATATAAAATAAAAAAAAAAAAAAAACTTCGTTTAATGTGAGTATTTTAGCATTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAAGATAAGTAAAA] [-] EMBL CA760520 [AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGAGAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCTCGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCACAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATTCAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAAATATGTTTAATATAAAATAAAAAAAAAAAAAAA ] [+] EMBL AU091310 [ CGGTGAGAGCCG TCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCTCGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCACAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATTCAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAATATTGTATTAAAATATGTTTAATATAAAATAAAATTAAATTGTAGACTTCGTTTAATGTGAGTATTTTAGCATTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAAGATAAGTAAAA] consensusID : consensus_5259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [AACGAGATTAGGCCGACTACTGGGAAAACAAAGGTTGGGGTGAGAGCGNTGGGGTGTGGGACTCAAACCCTGACGGCAATTTTTGCAGGGGAAGAGGTCGCGCGGGTATTGACACTGATTACTTTTGCAGGACTTGCTGTGTGGGCCTCCTAAAACTTATAATAA] [-] EMBL D42616 [AACGAGATTAGGCCGACTACTGGGAAAACAAAGGTTGGGGTGAGAGCGNTGGGGTGTGGGACTCAAACCCTGACGGCAATTTTTGCAGGGGAAGAGGTCGCGCGGGTATTGACACTGATTACTTTTGCAGGACTTGCTGTGTGGGCCTCCTAAAACTTATAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5259#0 AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGA 60 consensus_5259#1 ---------------AACGAGATTAGGCCGACTACTG-GGAAAACAAAG-GTTGGGGTGA 43 * *** * * * * *********** **** ***** consensus_5259#0 GAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCT 120 consensus_5259#1 GAGCGNT--GGGGTGTGGGACTCAAACCCTG-ACGGCAATTTTTGC-AGGGGAAGAGG-T 98 **** * **** *************** ************** *********** * consensus_5259#0 CGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCA 180 consensus_5259#1 CGCGCGGGTATTGACACTGATTACTTTTGCAGGACTTGC-TGTGTGGGCCTCCTAAAACT 157 ******************* ******************* ************* * * consensus_5259#0 CAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATT 240 consensus_5259#1 TATAATAA---------------------------------------------------- 165 * **** consensus_5259#0 CAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAA 300 consensus_5259#1 ------------------------------------------------------------ consensus_5259#0 ATATGTTTAATATAAAATAAAAAAAAAAAAAAAACTTCGTTTAATGTGAGTATTTTAGCA 360 consensus_5259#1 ------------------------------------------------------------ consensus_5259#0 TTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAA 420 consensus_5259#1 ------------------------------------------------------------ consensus_5259#0 GATAAGTAAAA 431 consensus_5259#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||