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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1296 fasta sequence
[TACTACACACTACACACTACACACTACTCCAACTCTCCAAGAGTCATGCTCCAGCCATGTCAACCACCGCGAAATTAGCAGGATTGCTTCGCGATGAGCAAGGTCCCGTCGCGTTCAACGACGCCGTCGACGAGGATGCCGTCCCGGTGGAACCACTCACGGAGCACGACGACGCCATCTCCGCCATGTCGGCGGCCCACTGCAACAACATGCAGTTCCGCTGCTACCGAGGATTCTGGATATCGGAGATGTGGGCGCCGGGTGTGGTCGCCGTGCACCGCAGTTTCGCACCTCGCGCCGACGACGTCCTCGTTGCGAGCCTGCAGAAGTCTGGTACCACGTGGCTCAAGGCCCTGACTTTCGCCACCATGGCGCGCGGCGCGTGGCCGCCGTCCAGCCACGACCACCCGCTCCGCCGCCTCAACCCGCATCTGTGTGTGCCTTCTCTGGAGGTCCTGTACACCCTAGGGCGCGACGCTCTGCTGGACATGCTGCCGTCGCCGAGGCTCTTGTCCACCCACATGCCGCTCTCGCTGTTGCCTCCTTCGACCTGCAAGATCGTCTATATTTACAGGGACCAAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGTGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGTTTCTTTTCTCCATACATGGTTTTTAAGGTCATTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATACACTTTTATGTAAAATCAAAGGTGTTTTTAATTATTATTCTGTGATGAACAA]
[+] EMBL AK058698 [TACTACACACTACACACTACACACTACTCCAACTCTCCAAGAGTCATGCTCCAGCCATGTCAACCACCGCGAAATTAGCAGGATTGCTTCGCGATGAGCAAGGTCCCGTCGCGTTCAACGACGCCGTCGACGAGGATGCCGTCCCGGTGGAACCACTCACGGAGCACGACGACGCCATCTCCGCCATGTCGGCGGCCCACTGCAACAACATGCAGTTCCGCTGCTACCGAGGATTCTGGATATCGGAGATGTGGGCGCCGGGTGTGGTCGCCGTGCACCGCAGTTTCGCACCTCGCGCCGACGACGTCCTCGTTGCGAGCCTGCAGAAGTCTGGTACCACGTGGCTCAAGGCCCTGACTTTCGCCACCATGGCGCGCGGCGCGTGGCCGCCGTCCAGCCACGACCACCCGCTCCGCCGCCTCAACCCGCATCTGTGTGTGCCTTCTCTGGAGGTCCTGTACACCCTAGGGCGCGACGCTCTGCTGGACATGCTGCCGTCGCCGAGGCTCTTGTCCACCCACATGCCGCTCTCGCTGTTGCCTCCTTCGACCTGCAAGATCGTCTATATTTACAGGGACCAAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGTGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGTTTCTTTTCTCCATACATGGTTTTTAAGGTCATTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATACACTTTTATGTAAAATCAAAGGTGTTTTTAATTATTATTCTGTGATGAACAA]
[+] EMBL OSS1919A [ AGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGGTATTNCACAAAGTCCTGATCTTTACCAGCTTTCTAG TTCTTTTCTCCATACAT ]
consensusID : consensus_5268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[TCTATTATATTGTGCTGCTAATTTATAGGGACCAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGCGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTACTTATTTTGATTTGTCTTGGTATGATGATAAATCTGNTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGNTTCTTTTCTNCATACATGGTTTTTAAGGTCATTTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATAC]
[+] EMBL CA767360 [TCTATTATATTGTGCTGCTAATTTATAGGGACCAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGCGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTACTTATTTTGATTTGTCTTGGTATGATGATAAATCTGNTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGNTTCTTTTCTNCATACATGGTTTTTAAGGTCATTTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5268#0 TACTACACACTACACACTACACACTACTCCAACTCTCCAAGAGTCATGCTCCAGCCATGT 60
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 CAACCACCGCGAAATTAGCAGGATTGCTTCGCGATGAGCAAGGTCCCGTCGCGTTCAACG 120
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 ACGCCGTCGACGAGGATGCCGTCCCGGTGGAACCACTCACGGAGCACGACGACGCCATCT 180
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 CCGCCATGTCGGCGGCCCACTGCAACAACATGCAGTTCCGCTGCTACCGAGGATTCTGGA 240
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 TATCGGAGATGTGGGCGCCGGGTGTGGTCGCCGTGCACCGCAGTTTCGCACCTCGCGCCG 300
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 ACGACGTCCTCGTTGCGAGCCTGCAGAAGTCTGGTACCACGTGGCTCAAGGCCCTGACTT 360
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 TCGCCACCATGGCGCGCGGCGCGTGGCCGCCGTCCAGCCACGACCACCCGCTCCGCCGCC 420
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 TCAACCCGCATCTGTGTGTGCCTTCTCTGGAGGTCCTGTACACCCTAGGGCGCGACGCTC 480
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 TGCTGGACATGCTGCCGTCGCCGAGGCTCTTGTCCACCCACATGCCGCTCTCGCTGTTGC 540
consensus_5268#1 ------------------------------------------------------------
consensus_5268#0 CTCCTTCGACCTGCAAGATCGT-CTAT--ATTTACAGGGACCAAAAAGACACAGCAGTTT 597
consensus_5268#1 ---------TCTATTATATTGTGCTGCTAATTTATAGGGACCAAAA-GACACAGCAGTTT 50
** * ** ** ** ***** *********** *************
consensus_5268#0 CTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGG 657
consensus_5268#1 CTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGG 110
************************************************************
consensus_5268#0 CCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGT 717
consensus_5268#1 CCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGT 170
************************************************************
consensus_5268#0 ACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAG 777
consensus_5268#1 ACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAG 230
************************************************************
consensus_5268#0 ACCCATGTGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTG 837
consensus_5268#1 ACCCATGCGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTG 290
******* ****************************************************
consensus_5268#0 AAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGA 897
consensus_5268#1 AAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGA 350
************************************************************
consensus_5268#0 ACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTA 957
consensus_5268#1 ACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTA 410
************************************************************
consensus_5268#0 GGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGG 1017
consensus_5268#1 GGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGG 470
************************************************************
consensus_5268#0 ATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTT 1077
consensus_5268#1 ATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTT 530
************************************************************
consensus_5268#0 ATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGG 1137
consensus_5268#1 ACTTATTTTGATTTGTCTTGGTATGATGATAAATCTGNTTCCATGCCAAAAATAAATCGG 590
* *********************************** **********************
consensus_5268#0 TATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGTTTCTTTTCTCCATACATGGTTTT 1197
consensus_5268#1 TATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGNTTCTTTTCTNCATACATGGTTTT 650
************************************ ********* *************
consensus_5268#0 TAAGGTCATT-CGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATACACTTTTATGTA 1256
consensus_5268#1 TAAGGTCATTTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATAC----------- 699
********** **************************************
consensus_5268#0 AAATCAAAGGTGTTTTTAATTATTATTCTGTGATGAACAA 1296
consensus_5268#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||