These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 910 fasta sequence [ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCGTCGTCGGGGAGAAGGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACA-GGGACAACGACGGC-AAGATCTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGCCGGGCGGCGGC-GGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTTACAGTTGATT] [+] EMBL AK107501 [ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCGTCGTCGGGGAGAAGGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACA GGGACAACGACGGC AAGATCTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGCCGGGCGGCGGC GGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTTACAGTTGATT] [+] EMBL AU091362 [ CATTTCGACAGGGGCCAACG CGGCAAAGATNTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGCCGGGCGNCGGCGGGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTTACAGT ] consensusID : consensus_5272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAACGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCTGCGGCGGCGGCGCNCNCGCCCCGCTATNCGGTAAGTCCGTCGGGGAAAAAGGCAGGGCGAGCTGCNCAGGATCTTCCAGCACTTCGACAGGGACA] [+] EMBL C74259 [GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAACGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCTGCGGCGGCGGCGCNCNCGCCCCGCTATNCGGTAAGTCCGTCGGGGAAAAAGGCAGGGCGAGCTGCNCAGGATCTTCCAGCACTTCGACAGGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5272#0 ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTA 60 consensus_5272#1 --------------------GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTA 40 **************************************** consensus_5272#0 CTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCC 120 consensus_5272#1 CTACATTTTCTTGGGTTTCTTGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAA-CGCC 99 ******************************* ****** **************** **** consensus_5272#0 TGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGG 180 consensus_5272#1 TGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGG 159 ************************************************************ consensus_5272#0 CGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCG--TCGTCGGGGAG 238 consensus_5272#1 CGAGCCCACGCTGCGGCGGCGGCGCNCNCGCC-CCGCTATNCGGTAAGTCCGTCGGGGAA 218 *********** ************* **** **** ** ********* consensus_5272#0 AA-GGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACAGGGACAACGACGGCAAGA 297 consensus_5272#1 AAAGGCAGGGCGAGCTGCNCAGGATCTTCCAGCACTTCGACAGGGACA------------ 266 ** *************** ***************************** consensus_5272#0 TCTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGT 357 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 CGCCGGGCGGCGGCGGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCC 417 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 TGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACG 477 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 CCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCG 537 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 GTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCG 597 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 ACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTC 657 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 AGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCC 717 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 TGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACAT 777 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 TGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAAT 837 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 TTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAA 897 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 GTTACAGTTGATT 910 consensus_5272#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||