These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence [GCCTCAGCCTCTGTCCGTCTCGCGCGCCGGCTGCCGCTGCACTTGCCCATGGCCATGGCGCCGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCTCCCTGTCGCCTCCTCCTCTTCTCGGGGGCTCCGCCGCCGGCCTACTACCTCCTTGCTCCGCTGCTCCTCGCCGTCGGCGGATGCGGCGTCGCCGTCGGGGGAGGGTGGCCGCGAGTACGAGCCCTCCTTCGCCGACGACTTCCTCCTCGCCTTCTTCCGTGCCAAGATGGTGGAGGAGGTTGGATGGGATTCTGAAAAGCCTGGCTACAATGGACTGATTGAAGTTGCCAACCGCCTCATGATCAAGGGGAAGAGTGCGTTGGAGACAGAGCAATCAGCTGTCCGAGTACTCCGATCACTGTTTCCCCCTCTCTTGCTTGTTCTCTTCAAAGCTCTTTTAGCACCAATTGCTAATGGTCAATTGGCTTCCATGATGGTTGCTAGAGCAACAGCACTTTCATGCCAATGGCTGATGGGGCCATGTTTGTTAAATTCCATAACATTATCCAATGGAAAATCATTATCAAGCGGGGTATTTGTTGAGAAGTGCAAATATTTGGAAGAGAGCAAATGCCTTGGTGTTTGTATCAACACATGCAAACTGCCAACTCAGACATTCTTCAAGGATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTCAACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTGGACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGTTTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCAGATGTCAGTGACTTCTACT-GCAGGAGAATACTGCAGAGTCTCTGAAGATGCCT-GGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTGATATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAATTCTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAATGATTTGTCTGCATTGCTAAA] [+] EMBL AK068008 [GCCTCAGCCTCTGTCCGTCTCGCGCGCCGGCTGCCGCTGCACTTGCCCATGGCCATGGCGCCGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCTCCCTGTCGCCTCCTCCTCTTCTCGGGGGCTCCGCCGCCGGCCTACTACCTCCTTGCTCCGCTGCTCCTCGCCGTCGGCGGATGCGGCGTCGCCGTCGGGGGAGGGTGGCCGCGAGTACGAGCCCTCCTTCGCCGACGACTTCCTCCTCGCCTTCTTCCGTGCCAAGATGGTGGAGGAGGTTGGATGGGATTCTGAAAAGCCTGGCTACAATGGACTGATTGAAGTTGCCAACCGCCTCATGATCAAGGGGAAGAGTGCGTTGGAGACAGAGCAATCAGCTGTCCGAGTACTCCGATCACTGTTTCCCCCTCTCTTGCTTGTTCTCTTCAAAGCTCTTTTAGCACCAATTGCTAATGGTCAATTGGCTTCCATGATGGTTGCTAGAGCAACAGCACTTTCATGCCAATGGCTGATGGGGCCATGTTTGTTAAATTCCATAACATTATCCAATGGAAAATCATTATCAAGCGGGGTATTTGTTGAGAAGTGCAAATATTTGGAAGAGAGCAAATGCCTTGGTGTTTGTATCAACACATGCAAACTGCCAACTCAGACATTCTTCAAGGATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTCAACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTGGACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGTTTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCAGATGTCAGTGACTTCTACT GCAGGAGAATACTGCAGAGTCTCTGAAGATGCCT GGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTGATATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAATTCTACTTGGAAATCAATTTGG ] [+] EMBL AU065948 [ CACATGCAAACTGCCAACTCAGACATTCTTCAAGGATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTCAACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTGGACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGTTTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCAGATGTCAGTGACTTCTACTGGCAGGAGAATACTGCAGAGTCTCTGAAGATGCCTGGGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTGATATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAATTCTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAATGATTTGTCTGCATTGCTAAA] consensusID : consensus_5275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [AGAGGACGAGACAAGGGGGGAACTGGTAGTAGCACAGATGGTTTGCAATGTCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGGGCCCAGATGTCAGCGACTTTTACTGCAGGAGAATACTGCAGAGTTGAATCTCTGAAGATGCCTGGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCCCTAGACTTAACTGCTATAGTTTGATTATCAATACTAACACTGTTGTCTCAAACAACAGCTTATATTTTTGGGATGTAACACAATTTTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAAAAAAAAAAAAAA] [-] EMBL CA761656 [AGAGGACGAGACAAGGGGGGAACTGGTAGTAGCACAGATGGTTTGCAATGTCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGGGCCCAGATGTCAGCGACTTTTACTGCAGGAGAATACTGCAGAGTTGAATCTCTGAAGATGCCTGGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCCCTAGACTTAACTGCTATAGTTTGATTATCAATACTAACACTGTTGTCTCAAACAACAGCTTATATTTTTGGGATGTAACACAATTTTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5275#0 GCCTCAGCCTCTGTCCGTCTCGCGCGCCGGCTGCCGCTGCACTTGCCCATGGCCATGGCG 60 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 CCGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCTCCCTGTCGCCTCCTCCTCTTCTCGG 120 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 GGGCTCCGCCGCCGGCCTACTACCTCCTTGCTCCGCTGCTCCTCGCCGTCGGCGGATGCG 180 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 GCGTCGCCGTCGGGGGAGGGTGGCCGCGAGTACGAGCCCTCCTTCGCCGACGACTTCCTC 240 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 CTCGCCTTCTTCCGTGCCAAGATGGTGGAGGAGGTTGGATGGGATTCTGAAAAGCCTGGC 300 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 TACAATGGACTGATTGAAGTTGCCAACCGCCTCATGATCAAGGGGAAGAGTGCGTTGGAG 360 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 ACAGAGCAATCAGCTGTCCGAGTACTCCGATCACTGTTTCCCCCTCTCTTGCTTGTTCTC 420 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 TTCAAAGCTCTTTTAGCACCAATTGCTAATGGTCAATTGGCTTCCATGATGGTTGCTAGA 480 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 GCAACAGCACTTTCATGCCAATGGCTGATGGGGCCATGTTTGTTAAATTCCATAACATTA 540 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 TCCAATGGAAAATCATTATCAAGCGGGGTATTTGTTGAGAAGTGCAAATATTTGGAAGAG 600 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 AGCAAATGCCTTGGTGTTTGTATCAACACATGCAAACTGCCAACTCAGACATTCTTCAAG 660 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 GATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTC 720 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 AACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTG 780 consensus_5275#1 ------------------------------------------------------------ consensus_5275#0 GACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGT 840 consensus_5275#1 ------------------AGAGGACGAGACAAGGGGGGAACTGGTAGTAGCACAGATGGT 42 *** **** * ** ************************ consensus_5275#0 TTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGAT 900 consensus_5275#1 TTGCAATGTCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGAT 102 ******** *************************************************** consensus_5275#0 GGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCA 960 consensus_5275#1 GGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGGGCCCA 162 ****************************************************** ***** consensus_5275#0 GATGTCAGTGACTTCTACTGCAGGAGAATACTGCAGAGT-----CTCTGAAGATGCCTGG 1015 consensus_5275#1 GATGTCAGCGACTTTTACTGCAGGAGAATACTGCAGAGTTGAATCTCTGAAGATGCCTGG 222 ******** ***** ************************ **************** consensus_5275#0 GCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTG 1075 consensus_5275#1 GCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCCCTAGACTTAACTGCTATAGTTTG 282 ************************************ ******************** ** consensus_5275#0 AT-ATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAA 1134 consensus_5275#1 ATTATCAATACTAACACTGTTGTCTCAAACAACAGCTTATATTTTTGGGATGTAACACAA 342 ** ******************************* ************************* consensus_5275#0 TTCTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAATGATTTGTCTGCATTGCTAAA 1194 consensus_5275#1 TTTTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAAAAAAAAAAAAAA--------- 393 ** ************************************ * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||