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Oryza sativa
cluster # 5282 cluster # 5282       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5282#0 length = 1879 sequences # 3  

consensusID : consensus_5282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1879
fasta sequence
                              [CGGCTGCTACTACTACTGCGTTGTGCGCACAATGCCAAGCGACCCACTACTGCCCTGCGTCTGCGTGTGCCGCGTATACGCACAAGCCAAAGAGAATTTTTAGGCGGGTAGAAACAAAAATCAGACCCAGTTTCGCGCAAAAAAAAAAACAAAGAGAAGCCCGGGGGTAAGAGAGAGAGAGAGAATTTGGGAGATGTGAGACGGAAGCAACAAGCACATGAGCGTTTTGTGATTAGGAACGGACAAAACAAGGTCATAAGGCGGCCTAATCAGGATTGGAGGAGAGGTCTAGTCTCCCTTTCTAGTTTCCCCTACATGACCAGCGTTGCCACCAGGATTGCCACGCTCGTGCGGGCCGCGGCGGCGGCGAGCCGGCCATTGCGGCTCCACCGCCGGCCCGGCGGCGAGGATACGAGGATGGTGGTGATCGTCGGCGCCACGGGCACCGGGAAGACCAAGCTGTCCATCGACGCCGCCAAGGTGATCGGCGGCGAGGTTGTCAACGCCGACAAGATTCAGCTCTATGACGGCCTCGACGTGACCACCAACAAGGTGAGCCTCGCCGACCGCCGTGGCGTGCCGCACCACCTCCTCGGAGCCATCCGCCCCGAGGCCGGCGAGCTCCCGCCGTCGTCCTTCCGGTCCCTCGCCGCCGCCACGGCCGCGTCGATCGCGGCGAGGCGGCTCGTGCCGGTCATCGCCGGTGGGTCGAACTCCCTCATCCACGCCCTCCTCGCCGACCACTTCGACGCCTCCGCTGGCGATCCCTTCTCCCCCGCCGCCGCCTTCCGCCACTACCGCCCGGCGCTCCGGTTCCCGTGCTGCCTGCTCTGGGTCCACGTCGATGAGGCGCTCCTCGACGAGTACCTCGACCGCCGCGTGGACGACATGGTGGACGCTGGCATGGTCGAGGAGCTCCGGGAGTACTTCGCCACGACAACCGCCGCGGAGCGCGCCGCGCACTCCGGGCTGGGCAAGGCCATCGGCGTCCCCGAGCTCGGCGACTACTTCGCCGGGCGCAAGACCTTCTCCGAGGCGATCGACGACATCAAAGCCAACACCCGCGTCCTCGCCGCCGCGCAGGTGTCCAAGATCCGCCGCATGTCCGACGCCTGGGGCTGGCCCATCCACCGCCTCGACGCCTCCGACACAGTCCGCGCCAGGCTCACGCGGGCGGGCTCCGCCGCCGAGTCCGCCTCCTGGGAGCGCGACGTGCGCGGCCCAGGCCTCGCCACCATCCGCAGCTTCCTCGCCGATCAGTCACCGCCACCGCGCAGCGAGGGC-ACCAACGACTACCTGTACGCCATGGAGACGGAACCAGAGCCGCCGCCGCCGCCGACGTTGCCGCCGC-GGCTGCTCCGG-TTGCCGC-GGATGCAGTACTGCGACATGGT-GGGGTGAGCTC----GCCGCC-GCCGCCGCC-GCCGCACGGCGCC-GCAGTCAC-TTCA-TTGAAGGCTTTTGGGGGTTCGAG-GGTTTAGGCCGCCA-ATTTTCCAGTGTCCCGGCGGCGCCCTTCTCTGACACTGCTCGGTGGGCCCAGAAAAAGTAGCCAGTGACATAGA-AAGAAGAGACAAAGGTAATTAACGTAGAGAGAGAG-AAGCTAAGCTATGCA-ACTGATGAGAAGTGTTCTTCTTCATTGCAGCAGAATTTGTGTACTCTTT-CTTGGAGAGGTGGTGATTCATCACATCGCTCTCCTCCTAACCGCGGCACTGTATGTATGTAGTGAGTAGTACTAATCATCTAATTATCCACCGTGTTCAGAATTTTGAGACAGATAATGAGTACAGTCTAGTATATGATTTTTCATCAGTGTTTGTTGCAGTGCAACGGGTGACCTGCTCTATTTCCGGAGCTGAATTTTTTTTGGTTTGGTTTTGTTTGTTTTGTT]

[+] EMBL AK071216             [CGGCTGCTACTACTACTGCGTTGTGCGCACAATGCCAAGCGACCCACTACTGCCCTGCGTCTGCGTGTGCCGCGTATACGCACAAGCCAAAGAGAATTTTTAGGCGGGTAGAAACAAAAATCAGACCCAGTTTCGCGCAAAAAAAAAAACAAAGAGAAGCCCGGGGGTAAGAGAGAGAGAGAGAATTTGGGAGATGTGAGACGGAAGCAACAAGCACATGAGCGTTTTGTGATTAGGAACGGACAAAACAAGGTCATAAGGCGGCCTAATCAGGATTGGAGGAGAGGTCTAGTCTCCCTTTCTAGTTTCCCCTACATGACCAGCGTTGCCACCAGGATTGCCACGCTCGTGCGGGCCGCGGCGGCGGCGAGCCGGCCATTGCGGCTCCACCGCCGGCCCGGCGGCGAGGATACGAGGATGGTGGTGATCGTCGGCGCCACGGGCACCGGGAAGACCAAGCTGTCCATCGACGCCGCCAAGGTGATCGGCGGCGAGGTTGTCAACGCCGACAAGATTCAGCTCTATGACGGCCTCGACGTGACCACCAACAAGGTGAGCCTCGCCGACCGCCGTGGCGTGCCGCACCACCTCCTCGGAGCCATCCGCCCCGAGGCCGGCGAGCTCCCGCCGTCGTCCTTCCGGTCCCTCGCCGCCGCCACGGCCGCGTCGATCGCGGCGAGGCGGCTCGTGCCGGTCATCGCCGGTGGGTCGAACTCCCTCATCCACGCCCTCCTCGCCGACCACTTCGACGCCTCCGCTGGCGATCCCTTCTCCCCCGCCGCCGCCTTCCGCCACTACCGCCCGGCGCTCCGGTTCCCGTGCTGCCTGCTCTGGGTCCACGTCGATGAGGCGCTCCTCGACGAGTACCTCGACCGCCGCGTGGACGACATGGTGGACGCTGGCATGGTCGAGGAGCTCCGGGAGTACTTCGCCACGACAACCGCCGCGGAGCGCGCCGCGCACTCCGGGCTGGGCAAGGCCATCGGCGTCCCCGAGCTCGGCGACTACTTCGCCGGGCGCAAGACCTTCTCCGAGGCGATCGACGACATCAAAGCCAACACCCGCGTCCTCGCCGCCGCGCAGGTGTCCAAGATCCGCCGCATGTCCGACGCCTGGGGCTGGCCCATCCACCGCCTCGACGCCTCCGACACAGTCCGCGCCAGGCTCACGCGGGCGGGCTCCGCCGCCGAGTCCGCCTCCTGGGAGCGCGACGTGCGCGGCCCAGGCCTCGCCACCATCCGCAGCTTCCTCGCCGATCAGTCACCGCCACCGCGCAGCGAGGGC ACCAACGACTACCTGTACGCCATGGAGACGGAACCAGAGCCGCCGCCGCCGCAGACGTTGCCGCCGC GGCTGCTCCGG TTGCCGC GGATGCAGTACTGCGACATGGT GGGGTGAGCTC    GCCGCC GCCGCCGCC GCCGCACGGCGCC GCAGTCAC TTCA TTGAAGGCTTTTGGGGGTTCGAG GGTTTAGGCCGCCA ATTTTCCAGTGTCCCGGCGGCGCCCTTCTCTGACACTGCTCGGTGGGCCCAGAAAAAGTAGCCAGTGACATAGA AAGAAGAGACAAAGGTAATTAACGTAGAGAGAGAG AAGCTAAGCTATGCA ACTGATGAGAAGTGTTCTTCTTCATTGCAGCAGAATTTGTGTACTCTTT CTTGGAGAGGTGGTGATTCATCACATCGCTCTCCTCCTAACCGCGGCACTGTATGTATGTAGTGAGTAGTACTAATCATCTAATTATCCACCGTGTTCA                                                                                                                                ]
[-] EMBL AK107474             [                                                                                                                                                                                                                              CGTTTTGTGATTAGGAACGGACAAAACAAGGTCATAAGGCGGCCTAATCAGGATTGGAGGAGAGGTCTAGTCTCCCTTTCTAGTTTCCCCTACATGACCAGCGTTGCCACCAGGATTGCCACGCTCGTGCGGGCCGCGGCGGCGGCGAGCCGGCCATTGCGGCTCCACCGCCGGCCCGGCGGCGAGGATACGAGGATGGTGGTGATCGTCGGCGCCACGGGCACCGGGAAGACCAAGCTGTCCATCGACGCCGCCAAGGTGATCGGCGGCGAGGTTGTCAACGCCGACAAGATTCAGCTCTATGACGGCCTCGACGTGACCACCAACAAGGTGAGCCTCGCCGACCGCCGTGGCGTGCCGCACCACCTCCTCGGAGCCATCCGCCCCGAGGCCGGCGAGCTCCCGCCGTCGTCCTTCCGGTCCCTCGCCGCCGCCACGGCCGCGTCGATCGCGGCGAGGCGGCTCGTGCCGGTCATCGCCGGTGGGTCGAACTCCCTCATCCACGCCCTCCTCGCCGACCACTTCGACGCCTCCGCTGGCGATCCCTTCTCCCCCGCCGCCGCCTTCCGCCACTACCGCCCGGCGCTCCGGTTCCCGTGCTGCCTGCTCTGGGTCCACGTCGATGAGGCGCTCCTCGACGAGTACCTCGACCGCCGCGTGGACGACATGGTGGACGCTGGCATGGTCGAGGAGCTCCGGGAGTACTTCGCCACGACAACCGCCGCGGAGCGCGCCGCGCACTCCGGGCTGGGCAAGGCCATCGGCGTCCCCGAGCTCGGCGACTACTTCGCCGGGCGCAAGACCTTCTCCGAGGCGATCGACGACATCAAAGCCAACACCCGCGTCCTCGCCGCCGCGCAGGTGTCCAAGATCCGCCGCATGTCCGACGCCTGGGGCTGGCCCATCCACCGCCTCGACGCCTCCGACACAGTCCGCGCCAGGCTCACGCGGGCGGGCTCCGCCGCCGAGTCCGCCTCCTGGGAGCGGGACGTGCGCGGCCCAGGCCTCGCCACCATCCGCAGCTTCCTCGCCGATCAGTCACCGCCACCGCGCAGCGAGGGC ACCAACGACTACCTGTACGCCATGGAGACGGAACCAGAGCCGCCGCCGCCGCCGACGTTGCCGCCGC GGCTGCTCCGG TTGCCGC GGATGCAGTACTGCGACATGGT GGGGTGAGCTC    GCCGCC GCCGCCGCC GCCGCACGGCGCC GCAGTCAC TTCA TTGAAGGCTTTTGGGGGTTCGAG GGTTTAGGCCGCCA ATTTTCCAGTGTCCCGGCGGCGCCCTTCTCTGACACTGCTCGGTGGGCCCAGAAAAAGTAGCCAGTGACATAGA AAGAAGAGACAAAGGTAATTAACGTAGAGAGAGAG AAGCTAAGCTATGCA ACTGATGAGAAGTGTTCTTCTTCATTGCAGCAGAATTTGTGTACTCTTT CTTGGAGAGGTGGTGATTCATCACATCGCTCTCCTCCTAACCGCGGCACTGTATGTATGTAGTGAGTAGTACTAATCATCTAATTATCCACCGTGTTCAGAATTTTGAGACAGATAATGAGTACAGTCTAGTATATGATTTTTCATCAGTGTTTGTTGCAGTGCAACGGGTGACCTGCTCTATTTCCGGAGCTGAATTTTTTTTGGTTTGGTTTTGTTTGTTTTGTT]
[+] EMBL BI800931             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tGGCAACCGACGAGTACCTGTACGCCATGGAG CGGTACCAGAGCCGCCACC CCGCCGACGTT CCACCGCTGTCTGCTCCGGCTTGCCGCGGGAT CAGTACTGCGACATGGTCGGGCTGAGCTCCCCAGCCGCCAGCCGCCGCCAGCCGCACGGCGCCTGCAGTCACATTCACTTGAAGGCTTTTGGGGGTTCGAGTGGTTTA GCCGCCACATTTTCCAGTGTCCC GCGGCGCCCTTCTCTGACACTGCTCGGTGGGCCCAGAAAAAGCAGCCAGTGACATAGACAAGAAGAGACAAAGGTAATTAACGTAGAGAGAGAGCAAGCTAAGCTAT CACACTGATGAGAAGTGTTCTTCTTCATTGCAGCAGAATTTGTGTACTCTTTCCTTGGAGAGGTGGTGATTCATCACATCGCTCTCCTCCTAACCGCGGCACTGTATGTATGTAGTGAGTAGTACTAATCATCTAATTATCCACCGTGTTCAGAATTTTGAGACAGATAATGAGTACAGTCTAGTATATGATTTTTCATCAaaaaaaa                                                                        ]


>consensus_5282#0 CGGCTGCTACTACTACTGCGTTGTGCGCACAATGCCAAGCGACCCACTACTGCCCTGCGT CTGCGTGTGCCGCGTATACGCACAAGCCAAAGAGAATTTTTAGGCGGGTAGAAACAAAAA TCAGACCCAGTTTCGCGCAAAAAAAAAAACAAAGAGAAGCCCGGGGGTAAGAGAGAGAGA GAGAATTTGGGAGATGTGAGACGGAAGCAACAAGCACATGAGCGTTTTGTGATTAGGAAC GGACAAAACAAGGTCATAAGGCGGCCTAATCAGGATTGGAGGAGAGGTCTAGTCTCCCTT TCTAGTTTCCCCTACATGACCAGCGTTGCCACCAGGATTGCCACGCTCGTGCGGGCCGCG GCGGCGGCGAGCCGGCCATTGCGGCTCCACCGCCGGCCCGGCGGCGAGGATACGAGGATG GTGGTGATCGTCGGCGCCACGGGCACCGGGAAGACCAAGCTGTCCATCGACGCCGCCAAG GTGATCGGCGGCGAGGTTGTCAACGCCGACAAGATTCAGCTCTATGACGGCCTCGACGTG ACCACCAACAAGGTGAGCCTCGCCGACCGCCGTGGCGTGCCGCACCACCTCCTCGGAGCC ATCCGCCCCGAGGCCGGCGAGCTCCCGCCGTCGTCCTTCCGGTCCCTCGCCGCCGCCACG GCCGCGTCGATCGCGGCGAGGCGGCTCGTGCCGGTCATCGCCGGTGGGTCGAACTCCCTC ATCCACGCCCTCCTCGCCGACCACTTCGACGCCTCCGCTGGCGATCCCTTCTCCCCCGCC GCCGCCTTCCGCCACTACCGCCCGGCGCTCCGGTTCCCGTGCTGCCTGCTCTGGGTCCAC GTCGATGAGGCGCTCCTCGACGAGTACCTCGACCGCCGCGTGGACGACATGGTGGACGCT GGCATGGTCGAGGAGCTCCGGGAGTACTTCGCCACGACAACCGCCGCGGAGCGCGCCGCG CACTCCGGGCTGGGCAAGGCCATCGGCGTCCCCGAGCTCGGCGACTACTTCGCCGGGCGC AAGACCTTCTCCGAGGCGATCGACGACATCAAAGCCAACACCCGCGTCCTCGCCGCCGCG CAGGTGTCCAAGATCCGCCGCATGTCCGACGCCTGGGGCTGGCCCATCCACCGCCTCGAC GCCTCCGACACAGTCCGCGCCAGGCTCACGCGGGCGGGCTCCGCCGCCGAGTCCGCCTCC TGGGAGCGCGACGTGCGCGGCCCAGGCCTCGCCACCATCCGCAGCTTCCTCGCCGATCAG TCACCGCCACCGCGCAGCGAGGGCACCAACGACTACCTGTACGCCATGGAGACGGAACCA GAGCCGCCGCCGCCGCCGACGTTGCCGCCGCGGCTGCTCCGGTTGCCGCGGATGCAGTAC TGCGACATGGTGGGGTGAGCTCGCCGCCGCCGCCGCCGCCGCACGGCGCCGCAGTCACTT CATTGAAGGCTTTTGGGGGTTCGAGGGTTTAGGCCGCCAATTTTCCAGTGTCCCGGCGGC GCCCTTCTCTGACACTGCTCGGTGGGCCCAGAAAAAGTAGCCAGTGACATAGAAAGAAGA GACAAAGGTAATTAACGTAGAGAGAGAGAAGCTAAGCTATGCAACTGATGAGAAGTGTTC TTCTTCATTGCAGCAGAATTTGTGTACTCTTTCTTGGAGAGGTGGTGATTCATCACATCG CTCTCCTCCTAACCGCGGCACTGTATGTATGTAGTGAGTAGTACTAATCATCTAATTATC CACCGTGTTCAGAATTTTGAGACAGATAATGAGTACAGTCTAGTATATGATTTTTCATCA GTGTTTGTTGCAGTGCAACGGGTGACCTGCTCTATTTCCGGAGCTGAATTTTTTTTGGTT TGGTTTTGTTTGTTTTGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)