These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAAGAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGT-GCATTTCAATGGTGAGCGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACAGNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGATGCTCCAAACAAGTAAGATGTGATTCTCCAATGGGTATTTGGAACACCAGTGTAATGACCAAAAAAAAAAA] [+] EMBL CA765391 [GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAAGAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGT GCATTTCAATGGTGAGCGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACAGNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGATGC ] [+] EMBL AU032751 [ tcCCTCGAGAAATACTTGAAGAAGTACAAGTACATGGCATTTCAATGGTGAGCNCGTTCGGGTGCGAAGGGGAGGCCCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAANCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACAGTGGACTCAATACAGTTACTAACTAGATACTGGTTTAGTTAATGGAAAGCATTGTGATGCTCCAAACAAGTAAGATGTGATTCTCCAATGGGTATTTGGAACACCAGTGTAATGACCAAAAAAAAAAA] consensusID : consensus_5367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGCTNGAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTTACNCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGATTTCTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAACAGNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGATGCTCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGACCATTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGCTNCNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG] [+] EMBL CB097227 [CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGCTNGAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTTACNCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGATTTCTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAACAGNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGATGCTCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGACCATTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGCTNCNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5367#0 GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAA 60 consensus_5367#1 ------------------------------------------------------------ consensus_5367#0 GAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGTGCATTTCAATGGTGAG 120 consensus_5367#1 ------------------------------------------------------------ consensus_5367#0 CGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGC 180 consensus_5367#1 --CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGC 58 * * *************************************** ****** consensus_5367#0 TTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTT 240 consensus_5367#1 TNGAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTT 118 * ************* *************** **************************** consensus_5367#0 AGC--AGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGAT 298 consensus_5367#1 ACNCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGAT 178 * ************** *********** *** ************** *** **** consensus_5367#0 TTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAA 358 consensus_5367#1 TTCTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAA 238 ***** ** ********** ********* ****************** * ********* consensus_5367#0 CAGNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGAT 418 consensus_5367#1 CAGNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGAT 298 ***************** ********* ******* **** *************** *** consensus_5367#0 GCTCCAAACAAGTAAGATGTGAT-TCTCCAATGGGTATTTG-GAACACCAGTGTAATGAC 476 consensus_5367#1 GCTCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGAC 358 ********** * *** ** *********** ***** ****** ** ** ***** consensus_5367#0 CAAAAAAAAAAA------------------------------------------------ 488 consensus_5367#1 CATTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGC 418 ** consensus_5367#0 ----------------------------------------------------- consensus_5367#1 TNCNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG 471 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||