These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCTCTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAGTCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCCCAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGCCAAATATTGATATTTTAAG] [+] EMBL CA762394 [TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCTCTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAGTCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCCCAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGCCAAATATTGATATTTTAAG] consensusID : consensus_5373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence [TTTTTTTTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGTGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGTCAAATATTGATATTTTAAGAGCTTGACATCTCTTGTAAGTAATACTCTTCTTTCCTTATAGGTTTGATTT] [-] EMBL AU173999 [TTTTTTTTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGTGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAA ] [-] EMBL AU173998 [ AAAAGGAAACGATGAATGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGTCAAATATTGATATTTTAAGAGCTTGACATCTCTTGTAAGTAATACTCTTCTTTCCTTATAGGTTTGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5373#0 TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGT 60 consensus_5373#1 ----------------------------------------------------TTTTTTTT 8 * * * consensus_5373#0 ACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGG 120 consensus_5373#1 ACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGTG 68 ********************************************************** * consensus_5373#0 GGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTG 180 consensus_5373#1 GGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTG 128 ************************************************************ consensus_5373#0 ATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAAC 240 consensus_5373#1 ATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAAC 188 ************************************************************ consensus_5373#0 CGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCT 300 consensus_5373#1 CGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCT 248 *** ************************************************ ******* consensus_5373#0 CTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAG 360 consensus_5373#1 CTGCAGCTTGGCACTCCTC----------------------------------------- 267 ******************* consensus_5373#0 TCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCC 420 consensus_5373#1 ---------------------------------------------------------TCC 270 *** consensus_5373#0 CAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAG 480 consensus_5373#1 CAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAG 330 ***** ****************************************************** consensus_5373#0 GAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTT 540 consensus_5373#1 GAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTT 390 ************************************************************ consensus_5373#0 TGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTT 600 consensus_5373#1 TGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTT 450 ************************************************************ consensus_5373#0 AACTGGAAAGTATCAATCACCTCTGCCA-GTTGATCATGTTTGAGAAGGCTCTTCACTCT 659 consensus_5373#1 AACTGGAAAGTATCAATCACCTCTGCCAAGTTGATCATGTTTGAGAAGGCTCTTCACTCT 510 **************************** ******************************* consensus_5373#0 GTATACCTGGTTACTTGCCAAATATTGATATTTTAAG----------------------- 696 consensus_5373#1 GTATACCTGGTTACTTGTCAAATATTGATATTTTAAGAGCTTGACATCTCTTGTAAGTAA 570 ***************** ******************* consensus_5373#0 ---------------------------- consensus_5373#1 TACTCTTCTTTCCTTATAGGTTTGATTT 598 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||