These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGCCCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGAGTGGCCCAGGTGGCCATGGATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC] [+] EMBL AK103350 [GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGCCCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGAGTGGCCCAGGTGGCCATGGATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC] consensusID : consensus_5389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GGNATGTTNTGNCCNGACTGGNTCGGCCAAGCNGNTCATACNGGCCCTCGGTGGTGNCATCCNATAAGGTGGNAAAGGTGNCGCGNCGACGGAGGNANAGTGCCCAGGTGCCATGATATGAATTGGCTCTGAAAGCGGNTCTGGATCTCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGNCCCTAAAATAAATATGTACCAAATAATACGTCTTNTACCCNAAATAATATAC] [-] EMBL D42980 [GGNATGTTNTGNCCNGACTGGNTCGGCCAAGCNGNTCATACNGGCCCTCGGTGGTGNCATCCNATAAGGTGGNAAAGGTGNCGCGNCGACGGAGGNANAGTGCCCAGGTGCCATGATATGAATTGGCTCTGAAAGCGGNTCTGGATCTCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGNCCCTAAAATAAATATGTACCAAATAATACGTCTTNTACCCNAAATAATATAC] consensusID : consensus_5389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [CAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF320963 [CAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5389#0 GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGC 60 consensus_5389#1 ---------GGNATG-TTNTGN--CCNGA-CTGGNT-CGGCCAAGCNGNT-CATACNGGC 45 consensus_5389#2 ------------------------------------------------------------ consensus_5389#0 CCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGA 120 consensus_5389#1 CCT-CGGTGGTGNC-AT-CCNATA-AGGTGGNAAAGGTGNCG-CGNCGACGGAGGN-ANA 99 consensus_5389#2 ------------------------------------------------------CAAATA 6 * * consensus_5389#0 GTGGCCCAGGTGGCCATGG-ATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTA- 178 consensus_5389#1 GTG-CCCAGGTG-CCATG--ATATG-AATTGGCTCTGAAAGCGGNTCTGGATCT-CCTA- 152 consensus_5389#2 ATACGTCTTGTACCAAAATAATATGCCA-TGGCATAGTTGTCATAGCTGGATAGTTGTAA 65 * * ** * * ***** * **** * * ****** ** consensus_5389#0 TAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAAC 238 consensus_5389#1 TAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAAC 212 consensus_5389#2 TAAAAGTAGTAGTCTTTAAGACTA----CTAAATACAATATATGTACACTTTCTCCTTAA 121 ** ** * * ** **** ****** * *** ** * * * * * * consensus_5389#0 ATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACC-AAAATAATATGC 297 consensus_5389#1 ATATATGNCCCTAAAATAAATATGTACCAAATAATACGTCTTNTACCCNAAATAATATAC 272 consensus_5389#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 179 * * * **** *** * * *** ** * * *** ** * consensus_5389#0 CATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTA 357 consensus_5389#1 ------------------------------------------------------------ consensus_5389#2 ------------------------------------------------------------ consensus_5389#0 AATACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC 398 consensus_5389#1 ----------------------------------------- consensus_5389#2 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||