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Oryza sativa
cluster # 5401 cluster # 5401       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5401#0 length = 1192 sequences # 1  
consensus_5401#1 length = 635 sequences # 1  
consensus_5401#2 length = 303 sequences # 1  

consensusID : consensus_5401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1192
fasta sequence
                              [GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCACCGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGGCCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGTCGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTATCTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCACTGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCGCTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGAGTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTTTGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA]

[+] EMBL AK067851             [GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCACCGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGGCCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGTCGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTATCTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCACTGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCGCTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGAGTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTTTGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA]


>consensus_5401#0 GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCAC CGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGG CCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGT CGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTAT CTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCAC TGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCG CTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTT TGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGA GTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTG GCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTT TGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAA CTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCT TGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTG GGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTT TGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAA TCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACC AATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGA GTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAAT AAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTG TGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA



consensusID : consensus_5401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence
                              [AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGATTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACAACTCTGGTATC]

[+] EMBL CB000194             [AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGATTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACAACTCTGGTATC]


>consensus_5401#1 AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGA TGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATA TTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGG GTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCAC GCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGAC AGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGA TGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGA TTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATA TAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTT ATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCC CGATTATGACGCACTGCGCGGACAACTCTGGTATC



consensusID : consensus_5401#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence
                              [TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGAAGT]

[-] EMBL CB483496             [TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGAAGT]


>consensus_5401#2 TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTC GCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTG GAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTA TATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGAT ATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGA AGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5401#0      GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCAC 60
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      CGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGG 120
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      CCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGT 180
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      CGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTAT 240
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      CTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCAC 300
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      TGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCG 360
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      CTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTT 420
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      TGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGA 480
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      GTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTG 540
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      GCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTT 600
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      TGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAA 660
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      ------------------------------------------------------------
                                                                                  

consensus_5401#0      CTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCT 720
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      -------------------------AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCT 35
                                                                                  

consensus_5401#0      TGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTG 780
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      TTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTG 95
                                                                                  

consensus_5401#0      GGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTT 840
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      AGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTT 155
                                                                                  

consensus_5401#0      TGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAA 900
consensus_5401#2      ----------------------------------------TATGGGTGGGGTACACCTAA 20
consensus_5401#1      GGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCT 215
                                                                 ***    **     *  

consensus_5401#0      TCACATCATACCATTCACTTATGCAGACT------------ACATGGCAGTCGCAGTGCT 948
consensus_5401#2      TCACATCATACCATTCACTTATGCAGACT------------ACATGGCAGTCGCAGTGCT 68
consensus_5401#1      TTGCAA-ACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGC 274
                      *  **  * **  ***** *   **  **            * ****  *   *  **  

consensus_5401#0      TGGTGCTCCA--CCAATGCCAAAGAAAGGGAC-CCGGATTATGACACAGTGTGTGGAGAA 1005
consensus_5401#2      TGGTGCTCCA--CCAATGCCAAAGAAAGGGAC-CCGGATTATGGCACAGTGTGTGGAGAA 125
consensus_5401#1      AACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTG 334
                         ****     *** ** *   ** **  *  ** *** ***   *    *  *     

consensus_5401#0      CAAG-TGT-ATCAAGGAGTTCCAAGATG---AGATGAAGGCCTTCATATAATATATATTA 1060
consensus_5401#2      CAAG-TGT-ATCAAGGAGTTCCAAGATG---AGATGAAGGCCTTCATATAATATATATTA 180
consensus_5401#1      CTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAG 394
                      *  * *** **** *    * *  ****   **  ** *  *  ***  * ***  *   

consensus_5401#0      TATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCA 1120
consensus_5401#2      TATGTGTA-----------------------------------TTTGCAGGGTCCAGTCA 205
consensus_5401#1      TGGGCTTCGTGGGATGTGAAAATTGATTCCTAC----------ACATTGACATTTGAACA 444
                      *  *  *                                             *     **

consensus_5401#0      ATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATAC 1180
consensus_5401#2      ATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACA-TTATATATAC 264
consensus_5401#1      CAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGG 504
                        *  ****** **** *    **  * * * ******    **      *    ***  

consensus_5401#0      GTGTGTTAA--TTA---------------------------------------------- 1192
consensus_5401#2      GTGTGTTAA--TTAAGTA-ATNAGAA-GTTTAGCTTGTGAAGT----------------- 303
consensus_5401#1      GCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACAT 564
                      * * * **    **                                              

consensus_5401#0      ------------------------------------------------------------
consensus_5401#2      ------------------------------------------------------------
consensus_5401#1      CGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACA 624
                                                                                  

consensus_5401#0      -----------
consensus_5401#2      -----------
consensus_5401#1      ACTCTGGTATC 635
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)