These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1708 fasta sequence [GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTCTGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCG-CGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGTGCAANTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATATGTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTCTCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCTCTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTTTGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTACGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCTGCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAATCAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGTGTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCTAGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTGCAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAACCAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCTCCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGACTAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTGGGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCTGGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATCTACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGCGAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGGGCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTGCCGATTCGTTCAAAAAAAAAATTGTGTT] [+] EMBL OSC9331 [GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTCTGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCG CGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGTGCAANTTTGGGGATTCAT ] [+] EMBL AK071420 [ TGTCGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGCCGCCCGCAAGCGCCACCTCGACGGCGCCCAGCACCACCGCGCCCGCGCCCTCTGGTACGACGCCGTCCGCCGCCAAGAGCTTCACGGCGGCGGCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCGCCGCCATCGGCGTCTGCCAACACTTCGTCCGTACGGGGACGTGCAAGTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATATGTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTCTCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCTCTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTTTGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTACGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCTGCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAATCAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGTGTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCTAGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTGCAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAACCAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCTCCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGACTAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTGGGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCTGGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATCTACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGCGAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGGGCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTGCCGATTCGTTCAAAAAAAAAATTGTGTT] consensusID : consensus_5405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [AGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAACATTTTAGGGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGGTGCCATATGTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174116 [AGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAACATTTTAGGGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGGTGCCATATGTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5405#0 GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGG 60 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGAC 120 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 ACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTC 180 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 TGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTC 240 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CTCCACCAGCCCGGCGCCGCGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGT 300 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GCAANTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGAC 360 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTC 420 consensus_5405#1 ----------------------------------------------------AGGAAGTC 8 ******** consensus_5405#0 AACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAG 480 consensus_5405#1 AACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAACATTTTAG 68 ***************************** ********* *** ************ *** consensus_5405#0 GGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCT 540 consensus_5405#1 GGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGAAGGCGGCT 128 ******** ********************************** **************** consensus_5405#0 ATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATAT 600 consensus_5405#1 ATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGGTGCCATAT 188 ********************************************* ************** consensus_5405#0 GTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTC 660 consensus_5405#1 GTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTNTAAAAAAA 248 ****************** ******************* *********** ** consensus_5405#0 TCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCT 720 consensus_5405#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 266 * *** * * consensus_5405#0 CTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTT 780 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 TGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTA 840 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCT 900 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAAT 960 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGT 1020 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCT 1080 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 AGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTG 1140 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAAC 1200 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCT 1260 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGAC 1320 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 TAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTG 1380 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCT 1440 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATC 1500 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 TACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGC 1560 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGG 1620 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 GCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTG 1680 consensus_5405#1 ------------------------------------------------------------ consensus_5405#0 CCGATTCGTTCAAAAAAAAAATTGTGTT 1708 consensus_5405#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||