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Oryza sativa
cluster # 5410 cluster # 5410       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5410#0 length = 1205 sequences # 3  

consensusID : consensus_5410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1205
fasta sequence
                              [TCCCTCTCTCCTCATCCTCCTCCGTGTTCCTGATCTGCGCACGCACGGCCGCCCTCCTCCTCCTCCCCCCGCGCTTCGCTTCCTCGCGCGCGCGCGTCATCGAAGCTGGCCTAGAGACTCCTCGGCGAGAGGACGGTTCTCCCCCCTCTCCCGCCCCCCGCGCGCGCGCGGCAGGTTTGGGAGATCGACGGTGGTCGGTGGCCTCCTCCCTCCTGTCCTGCCCGGTTCGAGTCGAATTGAAAGGCACAGCTGGTTCTGTCATTTGGCTGTTCAGAAGCCTGGAGGCTGGGCCATTTGATATCCTGAAGTTTTGAGTAAGAATGGAGAATGGGCTGTCCGATGAAGTTCTTAAAGC-AGTTTTCCCTCTACTGGATGGTCAAGACCTAGTCTTTTGCATGCTTGTATGTCGTCAATGGCGAGAAATTGCAAAGGATGACTACTTCTGGAAATGCATATGTGCGAGGAAGTGGCCTTCCATTTGCAAGCAACCTCCTTCAGATGCAAACTACCAGAAGCTCTATTTAACCTTCTCCAAACCACGGACGCCACAGCACCTTCCTGTACCAAAGCTCACATTCGAGGATCTTGTGTTTTACATTGACATGTGGCTTGACGGATCACTCATCTTCTCTCAAGCTGTTTCAGGCTGCATCCTTCGAGGAGGTCTGCAGAATACACCTTGTGGCATTCCGGATGTACTTGTAGCACATTTGACTGCTCCTGACTGCATTCTGATGATGGAGGTTGAACCCAAGCTGGAAATAACTATGGGGCCATCCATCACTGTGTCTGTTCTTGCCCACCGAAAGGATACAAAGAAGATGGCTTGCGTCATTAATAAGTCAACTTTTGATTACATCGACAGCAACGCAGCACGGGCATTGGCATATGAATATCTCCAGTTTTCACCAAGATACCCTTTTATATCAGACATCCGAGCATGGATGTCTTTGCTTTTCCTGTACAAAGGAACAAACGTCATCGAAGTATTTGGTATAGAGCTAGACTTTTGTGATGCAGCAAGGTCGGAGACTGAAATTCTTTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTTTAATCGTTTTTTCTGTTGTGATTTGACGCATGTAAAGAATGTTCATGGTTAATTCTTGTTATCCAGTTGAAGCATGTGTACTACTGAACCATATGTACTGTTGGAAATTTGGAATAAAAATGGTTC]

[+] EMBL AK069736             [TCCCTCTCTCCTCATCCTCCTCCGTGTTCCTGATCTGCGCACGCACGGCCGCCCTCCTCCTCCTCCCCCCGCGCTTCGCTTCCTCGCGCGCGCGCGTCATCGAAGCTGGCCTAGAGACTCCTCGGCGAGAGGACGGTTCTCCCCCCTCTCCCGCCCCCCGCGCGCGCGCGGCAGGTTTGGGAGATCGACGGTGGTCGGTGGCCTCCTCCCTCCTGTCCTGCCCGGTTCGAGTCGAATTGAAAGGCACAGCTGGTTCTGTCATTTGGCTGTTCAGAAGCCTGGAGGCTGGGCCATTTGATATCCTGAAGTTTTGAGTAAGAATGGAGAATGGGCTGTCCGATGAAGTTCTTAAAGC AGTTTTCCCTCTACTGGATGGTCAAGACCTAGTCTTTTGCATGCTTGTATGTCGTCAATGGCGAGAAATTGCAAAGGATGACTACTTCTGGAAATGCATATGTGCGAGGAAGTGGCCTTCCATTTGCAAGCAACCTCCTTCAGATGCAAACTACCAGAAGCTCTATTTAACCTTCTCCAAACCACGGACGCCACAGCACCTTCCTGTACCAAAGCTCACATTCGAGGATCTTGTGTTTTACATTGACATGTGGCTTGACGGATCACTCATCTTCTCTCAAGCTGTTTCAGGCTGCATCCTTCGAGGAGGTCTGCAGAATACACCTTGTGGCATTCCGGATGTACTTGTAGCACATTTGACTGCTCCTGACTGCATTCTGATGATGGAGGTTGAACCCAAGCTGGAAATAACTATGGGGCCATCCATCACTGTGTCTGTTCTTGCCCACCGAAAGGATACAAAGAAGATGGCTTGCGTCATTAATAAGTCAACTTTTGATTACATCGACAGCAACGCAGCACGGGCATTGGCATATGAATATCTCCAGTTTTCACCAAGATACCCTTTTATATCAGACATCCGAGCATGGATGTCTTTGCTTTTCCTGTACAAAGGAACAAACGTCATCGAAGTATTTGGTATAGAGCTAGACTTTTGTGATGCAGCAAGGTCGGAGACTGAAATTCTTTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTTTAATCGTTTTTTCTGTTGTGATTTGACGCATGTAAAGAATGTTCATGGTTAATTCTTGTTATCCAGTTGAAGCATGTGTACTACTGAACCATATGTACTGTTGGAAATTTGGAATAAAAATGGTTC]
[+] EMBL CK085340             [ CCCTCTCTCCTCATCCTCCTCCGTGTTCCTGATCTGCGCACGCACGGCCGCCCTCCTCCTCCTCCCCCCGCGCTTCGCTTCCTCGCGCGCGCGCGTCATCGAAGCTGGCCTAGAGACTCCTCGGCGAGAGGACGGTTCTCCCCCCTCTCCCGCCCCCCGCGCGCGCGCGGCAGGTTTGGGAGATCGACGGTGGTCGGTGGCCTCCTCCCTCCTGTCCTGCCCGGTTCGAGTCGAATTGAAAGGCACAGCTGGTTCTGTCATTTGGCTGTTCAGAAGCCTGGAGGCTGGGCCATTTGATATCCTGAAGTTTTGAGTAAGAATGGAGAATGGGCTGTCCGATGAAGTTCTTAAAGC AGTTTTCCCTCTACTGGATGGTCAAGACCTAGTCTTTTGCATGCTTGTATGTCGTCAATGGGGAGAAATTGCAAAGGATGACTACTTCTGGAAATGCATATGTGCGAGGAAGTGGCCTTCCATTTGCAAGCAACCTCCTTCAGATGCAAACTACCAGAAGCTCTATTTAACCTTCTCCAAACCACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB664362             [                       gggaTCCTGATCTGCGCACGCACGGCCGCCCTCCTCCTCCTCCCCCCGCGCTTCGCTTCCTCGCGCGCGCGCGTCATCAAAACTGGCCTAGAGACTCCTCGGCGAGAGGACGGTTCTCCCCCCTCTCCCGCCCCCCGCACGCGCGCGGAAGGTGTGGGAGATCGACAGGGGACGGGGGCCTCCTCCCTCCTGTCCTGCCCGGCTCGAGTCGAATTGAAAGGCACAGCTGGATCTGTCATTTGGCTGATCACAAGCCTGGAGGCTGGGCCATTTGATATCCTGAAGTTTTGAGTAACAATGGAGAATGGGCTGTCCGATGAAGTTCTTAAAGCTAG TTTCCCTCTACTGGATGGTCAAGACCTATTCTTTTGCATGCTTGTATGTCGTCAATGGCGAGAAATTGCAAAGGATGACTACTTCTGGAAATGCATATGTGCGAGGAAGTGGCCTTCCATTTGCAAGCAACCTCCTTCAGATGCCTACTACCAGAAGCTCTATTTAACCTTCTCCAAACCACGGACGCCACAGCACCTTCCTGTACCAAAGCTCACATTCGAGGATCTTGTGTTTTACATTGACATGTGGCTTGACGGATCACTCATCTTCTCTCAAGCTGTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_5410#0 TCCCTCTCTCCTCATCCTCCTCCGTGTTCCTGATCTGCGCACGCACGGCCGCCCTCCTCC TCCTCCCCCCGCGCTTCGCTTCCTCGCGCGCGCGCGTCATCGAAGCTGGCCTAGAGACTC CTCGGCGAGAGGACGGTTCTCCCCCCTCTCCCGCCCCCCGCGCGCGCGCGGCAGGTTTGG GAGATCGACGGTGGTCGGTGGCCTCCTCCCTCCTGTCCTGCCCGGTTCGAGTCGAATTGA AAGGCACAGCTGGTTCTGTCATTTGGCTGTTCAGAAGCCTGGAGGCTGGGCCATTTGATA TCCTGAAGTTTTGAGTAAGAATGGAGAATGGGCTGTCCGATGAAGTTCTTAAAGCAGTTT TCCCTCTACTGGATGGTCAAGACCTAGTCTTTTGCATGCTTGTATGTCGTCAATGGCGAG AAATTGCAAAGGATGACTACTTCTGGAAATGCATATGTGCGAGGAAGTGGCCTTCCATTT GCAAGCAACCTCCTTCAGATGCAAACTACCAGAAGCTCTATTTAACCTTCTCCAAACCAC GGACGCCACAGCACCTTCCTGTACCAAAGCTCACATTCGAGGATCTTGTGTTTTACATTG ACATGTGGCTTGACGGATCACTCATCTTCTCTCAAGCTGTTTCAGGCTGCATCCTTCGAG GAGGTCTGCAGAATACACCTTGTGGCATTCCGGATGTACTTGTAGCACATTTGACTGCTC CTGACTGCATTCTGATGATGGAGGTTGAACCCAAGCTGGAAATAACTATGGGGCCATCCA TCACTGTGTCTGTTCTTGCCCACCGAAAGGATACAAAGAAGATGGCTTGCGTCATTAATA AGTCAACTTTTGATTACATCGACAGCAACGCAGCACGGGCATTGGCATATGAATATCTCC AGTTTTCACCAAGATACCCTTTTATATCAGACATCCGAGCATGGATGTCTTTGCTTTTCC TGTACAAAGGAACAAACGTCATCGAAGTATTTGGTATAGAGCTAGACTTTTGTGATGCAG CAAGGTCGGAGACTGAAATTCTTTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTTT AATCGTTTTTTCTGTTGTGATTTGACGCATGTAAAGAATGTTCATGGTTAATTCTTGTTA TCCAGTTGAAGCATGTGTACTACTGAACCATATGTACTGTTGGAAATTTGGAATAAAAAT GGTTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)