These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAG] [+] EMBL AK064766 [TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAG] consensusID : consensus_5449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [AGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT] [-] EMBL BI305848 [AGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT] consensusID : consensus_5449#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GCCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCGCCTTCGGCCCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTTTTCACCTCCGGCGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATTTTTTTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT] [-] EMBL BI306449 [GCCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCGCCTTCGGCCCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTTTTCACCTCCGGCGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATTTTTTTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5449#1 -------------------------------AGAAGTGGAGATCAACGTCGTCGTGGCCG 29 consensus_5449#2 -----------------------------------------------------------G 1 consensus_5449#0 TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCG 60 * consensus_5449#1 CCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCC 89 consensus_5449#2 CCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGCC 61 consensus_5449#0 CCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCC 120 *********************************** ******************** *** consensus_5449#1 GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC 149 consensus_5449#2 GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC 121 consensus_5449#0 GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC 180 ************************************************************ consensus_5449#1 ACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCGGGGAACTAT 209 consensus_5449#2 ACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCG--------- 172 consensus_5449#0 ACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTG--------- 231 ********** ****** ** ********** * * * ** * consensus_5449#1 AATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCG 269 consensus_5449#2 ------------------------------------------------------------ consensus_5449#0 ---------CTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCG 282 consensus_5449#1 TCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTC 329 consensus_5449#2 ---CCTTCGGCCCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTT 229 consensus_5449#0 TCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTC 342 ******** *********************************************** consensus_5449#1 TTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTG 389 consensus_5449#2 TTCACCTCCGGCGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTG 289 consensus_5449#0 TTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTG 402 ******************* ****************************** ********* consensus_5449#1 TCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGT 449 consensus_5449#2 TCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGT 349 consensus_5449#0 TCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGT 462 ******************************************************* **** consensus_5449#1 AGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATT 509 consensus_5449#2 AGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATT 409 consensus_5449#0 AGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATT 522 ************************************************* **** ***** consensus_5449#1 TTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTAC 569 consensus_5449#2 TTTTTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTAC 469 consensus_5449#0 TTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTAC 582 *** ******************************************************** consensus_5449#1 CTGTTTAATACGAAACATGCAGT 592 consensus_5449#2 CTGTTTAATACGAAACATGCAGT 492 consensus_5449#0 CTGTTTAATACGAAACATGCAG- 604 ********************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||