These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1192 fasta sequence [CACCACTCCTCCTGCGCCTCCGCTCACCCGCGCCACCCGCCGCCGTCGCCGCCGGGTCCCTCTCCCGGCGGCGGCGGCGGCGCAGGGCCGGCCTCGCGCCGGTGCGAGCGTCGTGGCAGGAGCTTGCGGGGGTGCTGGTGTTCTCCGCCGTGCCCTTCACGGCCGTCAAGGCCCTCGCCAACAGCCCCCTCGGCGCCCGCCTCTGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCGCCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGCTCGTGGTATGGGGATGAACGGCCGCGGTGGCTAGGCCCCGTGCCGTACGAGTACCCGGCGCATCTCACCGGAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTTTCGCAAACTACTTCAACTTTGAGATCTTGCATTGTCGGTGGGCCATGCTTGCTGCTCTTGGTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGGTTGCATGGCTCGGCTTCTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGAACCTTGTTGAACACTTGTCGGACCCGCTGCATAACAACATTTTGTCCTCTTTTGTTTGAGCCTTCTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCACATGAACAGTAGGACTTATGTGCAGCTAGCGTTTATATTTACTGGTTTTGAACACTAGTTAGCTATTTACACATGTAAATATGTAACACTGGATAAGAAGATTTATGTGGGGTTTGTAAATGGCATGTCTTCAAACAAAGTTTACACGCCGCAAGAAATCGGCCACATTGTCAATAAGACTAAATTGATTC] [+] EMBL AK066997 [CACCACTCCTCCTGCGCCTCCGCTCACCCGCGCCACCCGCCGCCGTCGCCGCCGGGTCCCTCTCCCGGCGGCGGCGGCGGCGCAGGGCCGGCCTCGCGCCGGTGCGAGCGTCGTGGCAGGAGCTTGCGGGGGTGCTGGTGTTCTCCGCCGTGCCCTTCACGGCCGTCAAGGCCCTCGCCAACAGCCCCCTCGGCGCCCGCCTCTGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCGCCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGCTCGTGGTATGGGGATGAACGGCCGCGGTGGCTAGGCCCCGTGCCGTACGAGTACCCGGCGCATCTCACCGGAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTTTCGCAAACTACTTCAACTTTGAGATCTTGCATTGTCGGTGGGCCATGCTTGCTGCTCTTGGTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGGTTGCATGGCTCGGCTTCTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGAACCTTGTTGAACACTTGTCGGACCCGCTGCATAACAACATTTTGTCCTCTTTTGTTTGAGCCTTCTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCACATGAACAGTAGGACTTATGTGCAGCTAGCGTTTATATTTACTGGTTTTGAACACTAGTTAGCTATTTACACATGTAAATATGTAACACTGGATAAGAAGATTTATGTGGGGTTTGTAAATGGCATGTCTTCAAACAAAGTTTACACGCCGCAAGAAATCGGCCACATTGTCAATAAGACTA ] [-] EMBL CB624271 [ TGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTTTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAAGGGGTCATTGTCATCGCTATTTGTCAAGCCCTTTTGATGGTTGGTCCAGAATACGCAAGGTACTGCGGGATTGAGGCTTTAGAACCCTTGGGATTATATTTTCCGGGAGACATAAACTACCCGGGAGGAGCACTTTTTGATCCCTTGGGGCTTTCCAAAGATCCAGTTGCGTTTGAAGATTTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGGTTGCATGGCTCGGGTTTTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGAACCTTGTTGAACACTTGTTGGACCCGCTGCATAACAACATTTTGTCCTTTTTTGTTTGAGCCTTTTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCCCATGAACAGTAGGACTTATGTGCAGCTAGCGTTTATATTTACTGGTTTTGAACCCTAGTTAGCTATTTACCCATGTAAATATGTAACCCTGGATAAGAAGATTTATGTGGGGTTTGTAAATGGCATGTTTTCAAACAAAGTTTACCCCCCGCAAGAAATCGGCCCCATTGTCAATAAGACTAAATTGATTC] consensusID : consensus_5472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 909 fasta sequence [TTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCTATATCGGTCTGCTGGCAATGGTTGCATGGCTCGGCTTCTACATGCAGTCAGCTGTAACTGGCAAGGTGCCTAATTATAACCTTGTGGAACACTTGTCGTACCCGCTGCATAGCGTCATTTTGGCCTTTTTGGTTGGAGCCTTCTTTCGATGGACATAGCAGGTGTGTCCTGGTGTGGCCAGTGACCATGGGGACTGATGGCAGCTGAGCGTGATATGTAGTGTGTCTTGATCACTGGTTAGGTATCTTCGCGTTGCACTTTATGTCTGCAGTGGGTTAGAAAGATGTTTATTGGATGGTATGTATATGGACTGGTCGCCTAGCGAAGTATGAGCGCGTGTGGAATCTAGCATATTGCGGATGTGACGTCTATGATAGGTGTGAGTCTGTGTGTGGAGCTTATCTAGAGGTAGGCTGGGCCATGTGCTCATATGAGTCTCTATGGCTGTGGTGTGTTGTGTCCTGGGACTGGAAGCGTAGTCTACATCGGTTGTGACGCTCTTGCGTGGACTGTGAGGTCGCGCGCTCTAGCTGGGTCATGTTGAGACGACCGAGATGTGCGGTGCGGCTGTACTTGCTCATGGGCACTGTCGTTGTAGATGATGGGAGTGA] [+] EMBL AW155144 [TTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCTATATCGGTCTGCTGGCAATGGTTGCATGGCTCGGCTTCTACATGCAGTCAGCTGTAACTGGCAAGGTGCCTAATTATAACCTTGTGGAACACTTGTCGTACCCGCTGCATAGCGTCATTTTGGCCTTTTTGGTTGGAGCCTTCTTTCGATGGACATAGCAGGTGTGTCCTGGTGTGGCCAGTGACCATGGGGACTGATGGCAGCTGAGCGTGATATGTAGTGTGTCTTGATCACTGGTTAGGTATCTTCGCGTTGCACTTTATGTCTGCAGTGGGTTAGAAAGATGTTTATTGGATGGTATGTATATGGACTGGTCGCCTAGCGAAGTATGAGCGCGTGTGGAATCTAGCATATTGCGGATGTGACGTCTATGATAGGTGTGAGTCTGTGTGTGGAGCTTATCTAGAGGTAGGCTGGGCCATGTGCTCATATGAGTCTCTATGGCTGTGGTGTGTTGTGTCCTGGGACTGGAAGCGTAGTCTACATCGGTTGTGACGCTCTTGCGTGGACTGTGAGGTCGCGCGCTCTAGCTGGGTCATGTTGAGACGACCGAGATGTGCGGTGCGGCTGTACTTGCTCATGGGCACTGTCGTTGTAGATGATGGGAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5472#0 CACCACTCCTCCTGCGCCTCCGCTCACCCGCGCCACCCGCCGCCGTCGCCGCCGGGTCCC 60 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 TCTCCCGGCGGCGGCGGCGGCGCAGGGCCGGCCTCGCGCCGGTGCGAGCGTCGTGGCAGG 120 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 AGCTTGCGGGGGTGCTGGTGTTCTCCGCCGTGCCCTTCACGGCCGTCAAGGCCCTCGCCA 180 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 ACAGCCCCCTCGGCGCCCGCCTCTGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCG 240 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 CCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGCTCGTGGTATG 300 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 GGGATGAACGGCCGCGGTGGCTAGGCCCCGTGCCGTACGAGTACCCGGCGCATCTCACCG 360 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 GAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTT 420 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 TCGCAAACTACTTCAACTTTGAGATCTTGCATTGTCGGTGGGCCATGCTTGCTGCTCTTG 480 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 GTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTT 540 consensus_5472#1 --------------------------------------------TTTGTCGAGCCTGTTT 16 **************** consensus_5472#0 GGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTG 600 consensus_5472#1 GGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTG 76 ************************************************************ consensus_5472#0 GTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGA 660 consensus_5472#1 GTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGA 136 ************************************************************ consensus_5472#0 TGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTAT 720 consensus_5472#1 TGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTAT 196 ************************************************************ consensus_5472#0 ATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCA 780 consensus_5472#1 ATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCA 256 ************************************************************ consensus_5472#0 AAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAA 840 consensus_5472#1 AAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCTATATCGGTCTGCTGGCAA 316 ***************************************** * * ***** ******* consensus_5472#0 TGGTTGCATGGCTCGGCTTCTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGA 900 consensus_5472#1 TGGTTGCATGGCTCGGCTTCTACATGCAGTCAGCTGTAACTGGCAAGGTGCCTAATTATA 376 ************************* *** ****************** **** * * * consensus_5472#0 ACCTTGTTGAACACTTGTCGGACCCGCTGCATAACAACATTTTGTCCTCTTTTGTTTGAG 960 consensus_5472#1 ACCTTGTGGAACACTTGTCGTACCCGCTGCATAGCGTCATTTTGGCCTTTTTGGTTGGAG 436 ******* ************ ************ * ******* *** *** *** *** consensus_5472#0 CCTTCTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCACATGAACAGTAGGACTTAT 1020 consensus_5472#1 CCTTCTTTCGATGGACATAGCAGGTGTGTCCTGGTGTGGCCAGTGACCATGGGGACTGAT 496 ******** ************* ********* * * * *** ** ***** ** consensus_5472#0 GTGCAGCTAGCGTTTATATTTACTG-GTTTTGAACACTAGTTAGCTATTTACACATGTAA 1079 consensus_5472#1 G-GCAGCTGAGCGTGATATGTAGTGTGTCTTGATCACTGGTTAGGTATCTTCGCGTTGCA 555 * ****** * **** ** ** ** **** **** ***** *** * * * * * consensus_5472#0 ATATGTA---ACACTGGATAAGAA-GATTTATGTGGG---GTTTGTAAATGGCATG-TCT 1131 consensus_5472#1 CTTTATGTCTGCAGTGGGTTAGAAAGATGTTTATTGGATGGTATGTATATGGACTGGTCG 615 * * * ** *** * **** *** * * * ** ** **** **** ** ** consensus_5472#0 TCAAACAAAGTTTACACGCCGCAAGAAATCGGCCACATTGTCAATAAGACTAAATTGATT 1191 consensus_5472#1 CCTAGCGAAGTATGAGCGC-GTGTGGAATCTAGCATATTGCGGATGTGACGTCTATGATA 674 * * * **** * *** * * **** ** **** ** *** **** consensus_5472#0 C----------------------------------------------------------- 1192 consensus_5472#1 GGTGTGAGTCTGTGTGTGGAGCTTATCTAGAGGTAGGCTGGGCCATGTGCTCATATGAGT 734 consensus_5472#0 ------------------------------------------------------------ consensus_5472#1 CTCTATGGCTGTGGTGTGTTGTGTCCTGGGACTGGAAGCGTAGTCTACATCGGTTGTGAC 794 consensus_5472#0 ------------------------------------------------------------ consensus_5472#1 GCTCTTGCGTGGACTGTGAGGTCGCGCGCTCTAGCTGGGTCATGTTGAGACGACCGAGAT 854 consensus_5472#0 ------------------------------------------------------- consensus_5472#1 GTGCGGTGCGGCTGTACTTGCTCATGGGCACTGTCGTTGTAGATGATGGGAGTGA 909 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||