These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1376 fasta sequence [CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGATTAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGGCTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCTCCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCTCCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACCTCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGTGCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCAAGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGGCAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACTGCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCGAGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCGCGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCCGGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACTTCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCGGCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCGACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACGCCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATCGCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG] [+] EMBL AK106421 [CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGATTAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGGCTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCTCCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCTCCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACCTCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGTGCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCAAGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGGCAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACTGCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCGAGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCGCGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCCGGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACTTCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCGGCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCGACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACGCCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATCGCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG] consensusID : consensus_5483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence [AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGACGACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG] [+] EMBL CB648062 [AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGACGACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG] [+] EMBL CB647417 [AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGACGACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5483#0 CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGAT 60 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 TAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGG 120 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 CTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCT 180 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 CCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCT 240 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 CCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACC 300 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 TCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGT 360 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 GCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCA 420 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 AGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGG 480 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 CAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACT 540 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 GCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCG 600 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 AGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCG 660 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 CGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCC 720 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 GGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACT 780 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 TCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCG 840 consensus_5483#1 ------------------------------------------------------------ consensus_5483#0 GCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCG 900 consensus_5483#1 --------------------------------------------------------AACC 4 * * consensus_5483#0 ACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACG 960 consensus_5483#1 GCATCATGGACACCAGGCTCG-GCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCG 63 * ** * * * *** ** ** * ** * ** * * * ** consensus_5483#0 CCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATC 1020 consensus_5483#1 GCGCTCGCG-CTCCGCTGCC----TCCACCACGACC---CCAAGCTCCGCCCCGCCA--T 113 *** **** * ** * *** * * * **** * * ** ** ** ** * consensus_5483#0 GCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATC 1080 consensus_5483#1 GCCCGACGACGTGCTGCC------GCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATC 167 *** ** * * ** ** * * * ** ********************* consensus_5483#0 CTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTA 1140 consensus_5483#1 CTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTA 227 ************************************************************ consensus_5483#0 GCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATT 1200 consensus_5483#1 GCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATT 287 ************************************************************ consensus_5483#0 TGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGA 1260 consensus_5483#1 TGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGA 347 ************************************************************ consensus_5483#0 TGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGT 1320 consensus_5483#1 TGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGT 407 ************************************************************ consensus_5483#0 GAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG---- 1376 consensus_5483#1 GAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAG 467 ******************************************************** consensus_5483#0 ------------------------------------------------- consensus_5483#1 GTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG 516 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||