These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [TAGAAACTCTCGCTCTCTTCTCTCCCTGGCGCACTATCGCTGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAATTTTAACTATCCCTCGCCTCTCCAATAGCCGCTACTGTCGTGGAGATGGTCGGTGCCAAGCACTGCGCTTCTTCGGCGGCCCTGTTCTATCCCCATGAGTGTGCTCTCGGGTCTCTACTTCTTCCTCTCCCCCTCTAATTTCTAGTGTTTATATTGTGATTGAAAAATGTGTGGTTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGCAACTCTGCTAGAACACCACTTGCTCCTTCTTCAGGTTGGTCTCTCTGCTGTCTCACTTCAGCATCTTCTTGCTGCTNTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATCTGGATTTGGTACTTCCCCTGCTTTTCCTGGTGTTGATCCTCTTGCTTGAATGCTGCTCCTTTTTGCTTTTCCTAATACTCCTTTGACCTTTCATTCACTCACTTTAGCCTTTTCTGGGTGCACACACAAGGCTGCTACGGCTGTGGTTAAGCATGGTTTAGATGTTGAACTACTGATTTACTAGCTGTGATTATTTTTTTTTTTCCCAATTTCCCCTGATTTCCAGCCGAGGCTGCTTGCTGTTGCTGGGATTTTACTACTACTATGGCTGCTGTACTACTGGGAGTTGCTAGCTGTAGCTAGGTGTTTATCGTTGCAACCAAGGCTGGCTTTACCAGACTGTGGATAATTCCCATTGTTATGCTTTATCTCAGTGCATTTGGTGCTGGGGAAAAAAAAAAAAAAAAA] [+] EMBL CF295461 [TAGAAACTCTCGCTCTCTTCTCTCCCTGGCGCACTATCGCTGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAATTTTAACTATCCCTCGCCTCTCCAATAGCCGCTACTGTCGTGGAGATGGTCGGTGCCAAGCACTGCGCTTCTTCGGCGGCCCTGTTCTATCCCCATGAGTGTGCTCTCGGGTCTCTACTTCTTCCTCTCCCCCTCTAATTTCTAGTGTTTATATTGTGATTGAAAAATGTGTGGTTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGCAACTCTGCTAGAACACCACTTGCTCCTTCTTCAGGTTGGTCTCTCTGCTGTCTCACTTCAGCATCTTCTTGCTGCTNTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATCT ] [-] EMBL CF295460 [ ttTTGCTGCTTTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATTTGGATTTGGTACTTCCCCTGCTTTTCCTGGTGTTGATCCTCTTGCTTGAATGCTGCTCCTTTTTGCTTTTCCTAATACTCCTTTGACCTTTCATTCACTCACTTTAGCCTTTTCTGGGTGCACACACAAGGCTGCTACGGCTGTGGTTAAGCATGGTTTAGATGTTGAACTACTGATTTACTAGCTGTGATTATTTTTTTTTTTCCCAATTTCCCCTGATTTCCAGCCGAGGCTGCTTGCTGTTGCTGGGATTTTACTACTACTATGGCTGCTGTACTACTGGGAGTTGCTAGCTGTAGCTAGGTGTTTATCGTTGCAACCAAGGCTGGCTTTACCAGACTGTGGATAATTCCCATTGTTATGCTTTATCTCAGTGCATTTGGTGCTGGGGAAAAAAAAAAAAAAAAA] consensusID : consensus_5495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAACCCTAACTATCCCTCGCCTCTCCAATAGCCGCTGCTGCNGTGGAGATGGCCGGTGCCAAGCACTGCGCAANTCCGGCGGCCCTGTTCTATCCCCATGAGTGTGCNCTCGGTGATTGAAAAATGTGTGGNTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTAGAACACCACTTGCTCCTTCTTCANGTTGGGTCTCTCTGCTGGTCTCACTTCAGCAAT] [+] EMBL AU032112 [TGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAACCCTAACTATCCCTCGCCTCTCCAATAGCCGCTGCTGCNGTGGAGATGGCCGGTGCCAAGCACTGCGCAANTCCGGCGGCCCTGTTCTATCCCCATGAGTGTGCNCTCGGTGATTGAAAAATGTGTGGNTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTAGAACACCACTTGCTCCTTCTTCANGTTGGGTCTCTCTGCTGGTCTCACTTCAGCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5495#0 TAGAAACTCTCGCTCTCTTCTCTCCCTGGCGCACTATCGCTGCGCTCCCAGGGCGCATCG 60 consensus_5495#1 ----------------------------------------TGCGCTCCCAGGGCGCATCG 20 ******************** consensus_5495#0 CCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAATTTTAA 120 consensus_5495#1 CCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAACCCTAA 80 ****************************************************** *** consensus_5495#0 CTATCCCTCGCCTCTCCAATAGCCGCTACTGTCGTGGAGATGGTCGGTGCCAAGCACTGC 180 consensus_5495#1 CTATCCCTCGCCTCTCCAATAGCCGCTGCTGCNGTGGAGATGGCCGGTGCCAAGCACTGC 140 *************************** *** ********** **************** consensus_5495#0 GCTTCTTCGGCGGCCCTGTTCTATCCCCATGAGTGTGCTCTCGGGTCTCTACTTCTTCCT 240 consensus_5495#1 GCAANTCCGGCGGCCCTGTTCTATCCCCATGAGTGTGCNCTCGG---------------- 184 ** * ******************************* ***** consensus_5495#0 CTCCCCCTCTAATTTCTAGTGTTTATATTGTGATTGAAAAATGTGTGGTTCAGCCCCTCC 300 consensus_5495#1 ------------------------------TGATTGAAAAATGTGTGGNTCAGCCCCTCC 214 ****************** *********** consensus_5495#0 TTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGCAACTCTGCTA 360 consensus_5495#1 TTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTA 274 ************************************************* ********** consensus_5495#0 GAACACCACTTGCTCCTTCTTCAGGTTGG-TCTCTCTGCTG-TCTCACTTCAGCATCTTC 418 consensus_5495#1 GAACACCACTTGCTCCTTCTTCANGTTGGGTCTCTCTGCTGGTCTCACTTCAGCAAT--- 331 *********************** ***** *********** ************* consensus_5495#0 TTGCTGCTNTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATCTGGATTTGGT 478 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 ACTTCCCCTGCTTTTCCTGGTGTTGATCCTCTTGCTTGAATGCTGCTCCTTTTTGCTTTT 538 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 CCTAATACTCCTTTGACCTTTCATTCACTCACTTTAGCCTTTTCTGGGTGCACACACAAG 598 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 GCTGCTACGGCTGTGGTTAAGCATGGTTTAGATGTTGAACTACTGATTTACTAGCTGTGA 658 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 TTATTTTTTTTTTTCCCAATTTCCCCTGATTTCCAGCCGAGGCTGCTTGCTGTTGCTGGG 718 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 ATTTTACTACTACTATGGCTGCTGTACTACTGGGAGTTGCTAGCTGTAGCTAGGTGTTTA 778 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 TCGTTGCAACCAAGGCTGGCTTTACCAGACTGTGGATAATTCCCATTGTTATGCTTTATC 838 consensus_5495#1 ------------------------------------------------------------ consensus_5495#0 TCAGTGCATTTGGTGCTGGGGAAAAAAAAAAAAAAAAA 876 consensus_5495#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||