These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence [TTCGCAAATCGACAAGAACATTCTCTTGCCCCCAAATCAATCACAATGGCGAAGCGCACAACCAAGGTCGGTATCACCGGCAAGTACGGTACTAGATATGGTGCCTCCCTGAGGAAGCAGGTCAAGCGTATGGAAATCAGCCAGCACGCCAGGTACACATGCACCTTCTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTGCGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTCTCGACCCCCGCCGCCGCTGCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACACGAGTCTCTNTTTCCTTTNTCAAACAATGATCGATCGACCAGGTCCCGGATTGTGAGCAATCGAGCCGGGTATCCGAAAGGGCGACGAAATGCATGGTCATGNGGGGACAGCANANAATCATGGATGGTGACNGGAGTTCTTGGACTGTCCTTCGCGTATTTAATGCAATTGATTGCNTNTTTCGCATGAAAANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTNGGGGGGCCGTACAAATCCGCCATAAGGGGCGTATACGCCCCTATTGCCGCGTTTACACGCAGACTGAAAACCCTGGTACCACTAATCCTTGACAATCCCTTTTCCATGGTATAACGAAAGCCGCATACCCTTCACATTCACCTAAGGAGGGGCCCCTACGCTTAACCCGGGTGGGGTGGAGGACTAATTAACCAACCCCCTCTTTTTTTTTTTTTTTGTTCCCGNAAGGGGGTGGGTTTGTGCGCCCAACAAAAGGAGGAGGAGGGAGGAGGCTTGCGCGCTATTTGTTANACCANCATACTATT] [+] EMBL AW155531 [TTCGCAAATCGACAAGAACATTCTCTTGCCCCCAAATCAATCACAATGGCGAAGCGCACAACCAAGGTCGGTATCACCGGCAAGTACGGTACTAGATATGGTGCCTCCCTGAGGAAGCAGGTCAAGCGTATGGAAATCAGCCAGCACGCCAGGTACACATGCACCTTCTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTGCGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTCTCGACCCCCGCCGCCGCTGCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACACGAGTCTCTNTTTCCTTTNTCAAACAATGATCGATCGACCAGGTCCCGGATTGTGAGCAATCGAGCCGGGTATCCGAAAGGGCGACGAAATGCATGGTCATGNGGGGACAGCANANAATCATGGATGGTGACNGGAGTTCTTGGACTGTCCTTCGCGTATTTAATGCAATTGATTGCNTNTTTCGCATGAAAANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTNGGGGGGCCGTACAAATCCGCCATAAGGGGCGTATACGCCCCTATTGCCGCGTTTACACGCAGACTGAAAACCCTGGTACCACTAATCCTTGACAATCCCTTTTCCATGGTATAACGAAAGCCGCATACCCTTCACATTCACCTAAGGAGGGGCCCCTACGCTTAACCCGGGTGGGGTGGAGGACTAATTAACCAACCCCCTCTTTTTTTTTTTTTTTGTTCCCGNAAGGGGGTGGGTTTGTGCGCCCAACAAAAGGAGGAGGAGGGAGGAGGCTTGCGCGCTATTTGTTANACCANCATACTATT] consensusID : consensus_5518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [TCCATTCNCCAATGGGCCAAGCGCCCCAACCCAAGGTCGGTATNACNGGCAAGTACGGTACTAGATATGGTGCCTCCCCTGAGGAAGCAGGTCNAGCGTATGNAAATCAGCCAGCACGCCCAGGTACACATGCACCTTNTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTACGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTNTCGACCCCCGCCGCCGCTNCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACNCGAGTCTCTTTGTTCCTTTTTCCAAACAATGATCGATCGACCAGGTCCCGGATTGTNAGCAATCGAGCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAAAAAAAAA] [+] EMBL AT003365 [TCCATTCNCCAATGGGCCAAGCGCCCCAACCCAAGGTCGGTATNACNGGCAAGTACGGTACTAGATATGGTGCCTCCCCTGAGGAAGCAGGTCNAGCGTATGNAAATCAGCCAGCACGCCCAGGTACACATGCACCTTNTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTACGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTNTCGACCCCCGCCGCCGCTNCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACNCGAGTCTCTTTGTTCCTTTTTCCAAACAATGATCGATCGACCAGGTCCCGGATTGTNAGCAATCGAGCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAAAAAAAAA] consensusID : consensus_5518#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [ACCCCCNGTCAAANGCACTNGGGTTGGCATCTGGAAATGCGAGTGCTTGCNAGAANACCNTCAGCGGAGGAGCCTACAGTANTNTCNNGCCCCNCCGNCNCTACCGCCAGGNNNACCCTCNGGGGTNTGNGTGAGATNTCCNACGTTTTAATCTGNGNTTTTTCCCACGAGTNTCTNTGNTCCNTTTTTCCAACCANNNTNGNTTGGCCAGGTNCCGGATTGTGAGCAATCGANCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAA] [+] EMBL AT003545 [ACCCCCNGTCAAANGCACTNGGGTTGGCATCTGGAAATGCGAGTGCTTGCNAGAANACCNTCAGCGGAGGAGCCTACAGTANTNTCNNGCCCCNCCGNCNCTACCGCCAGGNNNACCCTCNGGGGTNTGNGTGAGATNTCCNACGTTTTAATCTGNGNTTTTTCCCACGAGTNTCTNTGNTCCNTTTTTCCAACCANNNTNGNTTGGCCAGGTNCCGGATTGTGAGCAATCGANCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5518#0 TTCGCAAATCGACAAGAACATTCTCTTGCCCCCAAATCAATCACAATGGCGAAGCGCACA 60 consensus_5518#1 -------------------------------TCCATTCNCCAATG--GGCCAAGCGCCCC 27 consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 A--CCAAGGTCGGTATCACCGGCAAGTACGGTACTAGATATGGTGCCTCCC-TGAGGAAG 117 consensus_5518#1 AACCCAAGGTCGGTATNACNGGCAAGTACGGTACTAGATATGGTGCCTCCCCTGAGGAAG 87 consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 CAGGTCAAGCGTATGGAAATCAGCCAGCACGCC-AGGTACACATGCACCTTCTGCGGCAA 176 consensus_5518#1 CAGGTCNAGCGTATGNAAATCAGCCAGCACGCCCAGGTACACATGCACCTTNTGCGGCAA 147 consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 GAACACCGTCAAGAGGCACTCGG-TTGGCATCTGGAACTGCG-GTGCTTGCAAGAAGACC 234 consensus_5518#1 GAACACCGTCAAGAGGCACTCGG-TTGGCATCTGGAACTACG-GTGCTTGCAAGAAGACC 205 consensus_5518#2 -ACCCCCNGTCAAANGCACTNGGGTTGGCATCTGGAAATGCGAGTGCTTGCNAGAANACC 59 * * ** * * ***** ** ************* * ** ******** **** *** consensus_5518#0 ATCAGCGGAGGAGCCTAC-GTCGTCTCGACCCCCGCCGCCGCTGCCGCCAGGTCGACCCT 293 consensus_5518#1 ATCAGCGGAGGAGCCTAC-GTCGTNTCGACCCCCGCCGCCGCTNCCGCCAGGTCGACCCT 264 consensus_5518#2 NTCAGCGGAGGAGCCTACAGTANTNTCNNGCCCCNCCGNCNCTACCGCCAGGNNNACCCT 119 ***************** ** * ** **** *** * ** ******** ***** consensus_5518#0 CAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACACGAGTCTCTNT- 352 consensus_5518#1 CAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACNCGAGTCTCTTTG 324 consensus_5518#2 CNGGGGTNTGNGTGAGATNTCCNACGTTTTAATCTGNGNTTTTTCCCACGAGTNTCTNTG 179 * ** ** ** ******* ** ****** **** * * ** * * ***** *** * consensus_5518#0 -TTCCTTTNTCAAACAATGATCGATCGACCAGGTCCCGGATTGTGAGCAATCGAGCCGGG 411 consensus_5518#1 TTCCTTTTTCCAAACAATGATCGATCGACCAGGTCCCGGATTGTNAGCAATCGAGCGGGG 384 consensus_5518#2 NTCCNTTTTTCCAACCANNNTNGNTTGGCCAGGTNCCGGATTGTGAGCAATCGANCGGGG 239 * * *** * *** * * * * * ****** ********* ********* * *** consensus_5518#0 TATCCGAAAGGGCGACGAAATGCATGGT-CATGNGGGGACAGCANANAATCATGGATGGT 470 consensus_5518#1 TATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGT 444 consensus_5518#2 TATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGT 299 ******************* ***** **** ********** * ************* consensus_5518#0 GACNGGAGTTCTTGG-ACTGTCCTTCGCGTATTTAATGCAATTGATTGCNTNTTTCGCAT 529 consensus_5518#1 GACGGAAGTTTCTGGGACTGTCCTTCG--------------------GCGTTATTTA-AT 483 consensus_5518#2 GACGGAAGTTTCTGGGACTGTCCTTCG--------------------GCGTTATTTA-AT 338 *** * **** *** *********** ** * ** ** consensus_5518#0 GAAAANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTNGGGGGGCCGTACAAATC 589 consensus_5518#1 GGCAAATGGAATGGCTTTTTCGGCATTGAAAAAAAAA----------------------- 520 consensus_5518#2 GGCAAATGGAATGGCTTTTTCGGCATTGAA------------------------------ 368 * ** * consensus_5518#0 CGCCATAAGGGGCGTATACGCCCCTATTGCCGCGTTTACACGCAGACTGAAAACCCTGGT 649 consensus_5518#1 ------------------------------------------------------------ consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 ACCACTAATCCTTGACAATCCCTTTTCCATGGTATAACGAAAGCCGCATACCCTTCACAT 709 consensus_5518#1 ------------------------------------------------------------ consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 TCACCTAAGGAGGGGCCCCTACGCTTAACCCGGGTGGGGTGGAGGACTAATTAACCAACC 769 consensus_5518#1 ------------------------------------------------------------ consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 CCCTCTTTTTTTTTTTTTTTGTTCCCGNAAGGGGGTGGGTTTGTGCGCCCAACAAAAGGA 829 consensus_5518#1 ------------------------------------------------------------ consensus_5518#2 ------------------------------------------------------------ consensus_5518#0 GGAGGAGGGAGGAGGCTTGCGCGCTATTTGTTANACCANCATACTATT 877 consensus_5518#1 ------------------------------------------------ consensus_5518#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||