These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1072 fasta sequence [GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCACTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAACAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAGCATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGGCCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAAGGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTGATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGCAATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACCCTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGTCAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGTGCTAACATAAGTAAGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA] [+] EMBL AK109905 [GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCACTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAACAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAGCATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGGCCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAAGGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTGATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGCAATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACCCTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGTCAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGTGCTAACATAAGTAAGCT ] [-] EMBL CA759185 [ AAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACCCTGTTTTCCATGAGCGCAGCAAGCATATTGATTTGCGCCATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTACAGCTGTTACTCGGTTGTCAGACAGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGTGCTAACATAAGTATGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA] consensusID : consensus_5534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [TTTTTTTTTTTTTTAACAGCTGAAGCCTATAGCTTACTGTCTAAGGAAGCCAAATAACTAACTAGAACAAGGATTATACTAACACATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC] [+] EMBL CA760943 [TTTTTTTTTTTTTTAACAGCTGAAGCCTATAGCTTACTGTCTAAGGAAGCCAAATAACTAACTAGAACAAGGATTATACTAACACATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5534#0 GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCA 60 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAA 120 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAG 180 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGG 240 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAA 300 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 GGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTG 360 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 ATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGC 420 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 AATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCA 480 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGC 540 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 AACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACC 600 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCT 660 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 TGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTC 720 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 TAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCA 780 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 AGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTC 840 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 TAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGT 900 consensus_5534#1 ------------------------------------------------------------ consensus_5534#0 CAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGC 960 consensus_5534#1 --------------------------------TTTTTTTTTTTTTTAACAGCTGAA-GCC 27 ** **** * ** *** * * consensus_5534#0 AGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGT 1020 consensus_5534#1 TATAGC----TTACTGTCTAAGGAAGCCAAATAACTAACTAGAACAAGGATTATACTAAC 83 *** ** * * ** ** * * ** * * ** * ** ** * consensus_5534#0 GCTAACATAAGTAAGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA 1072 consensus_5534#1 AC--ATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC-------------- 119 * * * ** * * * ** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||