These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGCATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGGGGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGCAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGATTTGCAAGACG] [+] EMBL AK108095 [TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGCATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGGGGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGCAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGATTTGCAAGACG] consensusID : consensus_5548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 329 fasta sequence [GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATATTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTTGCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTTATTTGGCAGGCTAATCGTGATACATGTTTAACTTTTATGACGAAGACAGGAAATAAAGTAGTACAAAAACTTTCATAAAAAAAAAAAAA] [+] EMBL AU033251 [GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATATTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTTGCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTTATTTGGCAGGCTAATCGTGATACATGTTTAACTTTTATGACGAAGACAGGAAATAAAGTAGTACAAAAACTTTCATAAAAAAAAAAAAA] [+] EMBL AA749631 [ AGACTGTTGCTTATATTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTTGCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTTATTTGGCAGGCTAATCGTGATACATGTTTAAC TTTATGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5548#0 TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGC 60 consensus_5548#1 ------------------------------------------------------------ consensus_5548#0 ATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCT 120 consensus_5548#1 ------------------------------------------------------------ consensus_5548#0 CGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTAC 180 consensus_5548#1 ------------------------------------------------------------ consensus_5548#0 ATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTT 240 consensus_5548#1 ------------GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTT 48 ************************************************ consensus_5548#0 TGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGG 300 consensus_5548#1 TGAGTCCAAAGCACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATA 108 ********************* * * * * **** ** * * * consensus_5548#0 GGTGGTGATGCCGATTGAAAGCAGTG-TGGCAAGTTCGATGCGGACATCTAGTACGGCAG 359 consensus_5548#1 TTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGT-------CCA 161 ** * * * * ** * **** **** ** *** * * consensus_5548#0 CGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAG 419 consensus_5548#1 TCATTTTCCCTTGTTA---TTTGCATAATTACAGGG-AGACTGTTCCTTGATTTGCTAAC 217 ***** * ** * * * *** * * ** * *** * ** * consensus_5548#0 CAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTG 479 consensus_5548#1 AAAAATAACTGTTGTTACAGTTTATTTGGCAG----GCTAATCGTGATACAT--GTTTAA 271 * *** * * * * * *** ** ** ** * * * * * consensus_5548#0 CTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAG 539 consensus_5548#1 CTTT----TATGA--CGAAGACAG--GAAATAAAGTAGTACAAAAACTTTCATAAAAAAA 323 **** **** ** * * *** ** * * ***** ** *** consensus_5548#0 ATTTGCAAGACG 551 consensus_5548#1 AA----AAAA-- 329 * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||