Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5559 cluster # 5559       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5559#0 length = 2486 sequences # 3  
consensusID : consensus_5559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2486
fasta sequence 
                              [ATTCCCCCGCCTCATCTCCTCTCCTCTCCTCCCCCCTGCTTCTCCGACCAAAGCCGCGCCGCGCATTCCGCCGCCATGTCCGCCGCGCTCCACACGCTCCCCGCCGTCGCCGCTGGCGGCCTCGGCTGTCGGTGGCGGCGGCCCTCCGCGACGCTACGGGCGGCGAGCTCCGTGGGGACGGCGTCGGTGGCGGTGTCCGTGAATGCGGAGACGCAGCAGCAGCGGCAGGTGGGTGTGGAGGAGGAGGAGAAGAGGAGGGAGGATGCGGCGGAGGTGAGGACGGGCAGGGTGGTGGAGGCTCTCTACGACGACGGGTTCGGCGGCGTCACGGTGAAGGACTACTTCGCGGCGGCCAGGGCCGTCTCCAGCGACGACGGCGGCCCGCCGCGGTGGTTCTGCCCCGTCGACGCCGGCCGGCCGGCCGGTGGACAACGCGCCGCTGCTGCTCTTCTTGCCAGGAACTGATGGTGTTGGAATGGGGCTCATTTTGCACCACAAGTCTTTGGGAAGGGTATTCGAGGTTCGCTGCTTGCATATACCAGTGAATGATCGTACGCCATTTGAAGGGTTGTTGCAGATTGTGGAAAATTCTATCAAATATGAGCATGCTATGTCACCAAACCGACCCATATATCTCATCGGGGACTCATTTGGAGGATGCCTAGCACTTTCGGTGGCAGCTCGTAATCCACAAATTGATCTGGTTCTCATACTGATTAATCCAGCAACGTCCTTTGCAAAGACTCCGTTGCAGCCGATATTACCTGTGTTGGAAGCAATGCCAAGTGAACTTCATGTCACAGTTCCATATCTTCTCAGTTTTGTCATGGGCGATCCTCTTAAAATGGCTATGGTCAGCGTTGAGAACAACCTTTCTCCTCCAAAAACTCTGCAGAAGTTGTCAGATAGTCTCACTTCCATGCTGCCTTTGCTTTCAGAATTGGCAGATATCATACCAAGGGATACTCTTTTCTGGAAACTCAAGCTGCTGAAGTCAGGAGCAGCCTACGCTAACTCTCGTCTTCATGCTGTACAAGCTGAAGTTCTACTTCTTGCTAGTGGCAATGATAATCTTCTGCCAAGTGGAGAAGAGGCAGATAGACTCTTCAAATCACTGAAAAACTGCAGAGTTCGGTACTTCAAAGACAATGGCCATACACTACTGTTGGAGGACGGTGTTAATCTTTTATCAGTCATAAAAGGAGTAAATATGTACCGCCGTGGCAGACAACGGGATCCTGTGACGGATTACATTCCCCCGACATTGAGTGAGTTCAAGAAAACATTCGATGAAGATCACAAATTGTTTCACCTTGCATTGAGCCCAGTCATGCTGTCTACCCTGAAGAATGGGAAGATTGTTCGTGGCCTTACTGGTGTTCCTGACCAAGGTCCTGTCTTGTTTGTGGGTTATCATGCACTGATGGGGATCGAGTTGAGTCCATTGTACGAGGAGTTCTTGAGAGAGAAGAGAACAAGTTTCCGTGGTATGGCTCACCCAATTTTATTTGGAGGAAAACATGAGAGTTCGCGACAGGAGCTGTCTCGGTTCGATACAATTTCTATGTACGGTGGATTACCAGTCACTGCGATCAATATGTATAGGTTGTTTGAGAGAAATCAATTTGTTTTGCTCTATCCAGGCGGTGTGCGGGAAGCTCTTCACAGGAAGGGTGAAGCATACAAGTTGTTTTGGCCAGACCAACCAGAATTTGTAAGAATGGCAGCACGTTTTGGTGTTACTATCATACCATTTGGTTTTGTAGGAGAAGATGATGTTTTAGAGTTGGTCGCCGACTACAATGATCAAAAGAACATTCCCTACCTTCGGGAATGGATTGAGTCGATTAACCGAGAAGCCAAAAGAGTAAGGGATAGCGTCAAAGGAGAGGATGGAAATCAAGACGTTCACATACCTGCTTTGCTCCCCAAAGTGCCAGGCCGGTTCTACTACCTATTTGGCAAACCAATCGAAATGAAAGGTATGGATAATGTCGTCAGAGATAGGAAAAGTGCAAACGAAGTGTATTT-GCATATCAAATCCGAA-GTAGAGAGCTTAATGTCATATCTGAAGAGGAAGAGGGAGGAAGATCCTTACAGAAGCATAGCGCAGCGTGCAGTGTACCAGGCATCTTGGGGTGCTTCTG-CAGAGGTCCCAACATTTGAACCA-TGAAGGTTGGGTGATCTCGTGGTACTGTGATTGAATGAGCATCGGCAATCTTGTGTTCCGAAGCAAACATGGAAAGGGGGTATTATCTGTTGGAAGTAAATAGCATTTTCAGTAGGCTGGCTGCAAGCCTGCAACTCTTGAATCAGTTACACA-TTTTGATGGAACATACCCCCAAATAGGCCA-TTATA-CAAGTGTATAGTAAAGTAGAACAGATATATCTGAACAGTTTTTTTTTTGTTATATATTTTAACCAATGTATAGTGATTGATATACAGACTAGTTACTGATGAATGGAATTCTTGCTCATAAAAAAAAA]

[+] EMBL AK065319             [ATTCCCCCGCCTCATCTCCTCTCCTCTCCTCCCCCCTGCTTCTCCGACCAAAGCCGCGCCGCGCATTCCGCCGCCATGTCCGCCGCGCTCCACACGCTCCCCGCCGTCGCCGCTGGCGGCCTCGGCTGTCGGTGGCGGCGGCCCTCCGCGACGCTACGGGCGGCGAGCTCCGTGGGGACGGCGTCGGTGGCGGTGTCCGTGAATGCGGAGACGCAGCAGCAGCGGCAGGTGGGTGTGGAGGAGGAGGAGAAGAGGAGGGAGGATGCGGCGGAGGTGAGGACGGGCAGGGTGGTGGAGGCTCTCTACGACGACGGGTTCGGCGGCGTCACGGTGAAGGACTACTTCGCGGCGGCCAGGGCCGTCTCCAGCGACGACGGCGGCCCGCCGCGGTGGTTCTGCCCCGTCGACGCCGGCCGGCCGGCCGGTGGACAACGCGCCGCTGCTGCTCTTCTTGCCAGGAACTGATGGTGTTGGAATGGGGCTCATTTTGCACCACAAGTCTTTGGGAAGGGTATTCGAGGTTCGCTGCTTGCATATACCAGTGAATGATCGTACGCCATTTGAAGGGTTGTTGCAGATTGTGGAAAATTCTATCAAATATGAGCATGCTATGTCACCAAACCGACCCATATATCTCATCGGGGACTCATTTGGAGGATGCCTAGCACTTTCGGTGGCAGCTCGTAATCCACAAATTGATCTGGTTCTCATACTGATTAATCCAGCAACGTCCTTTGCAAAGACTCCGTTGCAGCCGATATTACCTGTGTTGGAAGCAATGCCAAGTGAACTTCATGTCACAGTTCCATATCTTCTCAGTTTTGTCATGGGCGATCCTCTTAAAATGGCTATGGTCAGCGTTGAGAACAACCTTTCTCCTCCAAAAACTCTGCAGAAGTTGTCAGATAGTCTCACTTCCATGCTGCCTTTGCTTTCAGAATTGGCAGATATCATACCAAGGGATACTCTTTTCTGGAAACTCAAGCTGCTGAAGTCAGGAGCAGCCTACGCTAACTCTCGTCTTCATGCTGTACAAGCTGAAGTTCTACTTCTTGCTAGTGGCAATGATAATCTTCTGCCAAGTGGAGAAGAGGCAGATAGACTCTTCAAATCACTGAAAAACTGCAGAGTTCGGTACTTCAAAGACAATGGCCATACACTACTGTTGGAGGACGGTGTTAATCTTTTATCAGTCATAAAAGGAGTAAATATGTACCGCCGTGGCAGACAACGGGATCCTGTGACGGATTACATTCCCCCGACATTGAGTGAGTTCAAGAAAACATTCGATGAAGATCACAAATTGTTTCACCTTGCATTGAGCCCAGTCATGCTGTCTACCCTGAAGAATGGGAAGATTGTTCGTGGCCTTACTGGTGTTCCTGACCAAGGTCCTGTCTTGTTTGTGGGTTATCATGCACTGATGGGGATCGAGTTGAGTCCATTGTACGAGGAGTTCTTGAGAGAGAAGAGAACAAGTTTCCGTGGTATGGCTCACCCAATTTTATTTGGAGGAAAACATGAGAGTTCGCGACAGGAGCTGTCTCGGTTCGATACAATTTCTATGTACGGTGGATTACCAGTCACTGCGATCAATATGTATAGGTTGTTTGAGAGAAATCAATTTGTTTTGCTCTATCCAGGCGGTGTGCGGGAAGCTCTTCACAGGAAGGGTGAAGCATACAAGTTGTTTTGGCCAGACCAACCAGAATTTGTAAGAATGGCAGCACGTTTTGGTGTTACTATCATACCATTTGGTTTTGTAGGAGAAGATGATGTTTTAGAGTTGGTCGCCGACTACAATGATCAAAAGAACATTCCCTACCTTCGGGAATGGATTGAGTCGATTAACCGAGAAGCCAAAAGAGTAAGGGATAGCGTCAAAGGAGAGGATGGAAATCAAGACGTTCACATACCTGCTTTGCTCCCCAAAGTGCCAGGCCGGTTCTACTACCTATTTGGCAAACCAATCGAAATGAAAGGTATGGATAATGTCGTCAGAGATAGGAAAAGTGCAAACGAAGTGTATTT GCATATCAAATCCGAA GTAGAGAGCTTAATGTCATATCTGAAGAGGAAGAGGGAGGAAGATCCTTACAGAAGCATAGCGCAGCGTGCAGTGTACCAGGCATCTTGGGGTGCTTCTG CAGAGGTCCCAACATTTGAACCA TGAAGGTTGGGTGATCTCGTGGTACTGTGATTGAATGAGCATCGGCAATCTTGTGTTCCGAAGCAAACATGGAAAGGGGGTATTATCTGTTGGAAGTAAATAGCATTTTCAGTAGGCTGGCTGCAAGCCTGCAACTCTTGAATCAGTTACACA TTTTGATGGAACATACCCCCAAATAGGCCA TTATA CAAGTGTATAGTAAAGTAGAACAGATATATCTGAACAGTTTTTTTTTTGTTATATATTTTAACCAATGTATAGTGATTGATATACAGACTAGTTACTGATGAATGGA                     ]
[-] EMBL CA305820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTTGCAGATTGTGGAAAATTCTATCAAATATGAGCATGCTATGTCACCAAACCGACCCATATATCTCGTCGGGGACTCATTTGGAGGATGCCTAGCACTTTCGGTGGCAGCTCGTAATCCACAAATTGATCTGGTTCTCATACTGATTAATCCAGCAACGTCCTTTGCAAAGACTCCGTTGCAGCCGATATTACCTGTGTTGGAAGCAATGCCAAGTGAACTTCATGTCACAGTTCCATATCTTCTCAGTTTTGTCATGGGCGATCCTCTTAAAATGGCTATGGTCAGCGTTGAGAACAACCTTTCTCCTCCAAAAACTCTGCAGAAGTTGTCAGATAGTCTCACTTCCATGCTGCCTTTGCTTTCAGAATTGGCAGATATCATACCAAGGGATACTCTTTTCTGGAAACTCAAGCTGCTGAAGTCAGGAGCAGCCTACGCTAACTCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI811962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAAA GTATGGATAATGTCGTCAGAGATAGGAAAAGT CCAACGAAGTGTATTTGGCATATCAAATCCGAATGTAGAGAGCTTAATGTCATATCTGAAGAGGAAGAGGGAGGAAGATCCTTACAGAAGCATAGC CAGCGTCCAGTGTACCAGGCATCTTGGGGTGCTTCTGCCAGAGGTCCCAACATTTGAACCACTGAAGGTTGGGTGATCTCGTGGTACTGTGATTGAATGAGCATC GC ATCTTGTGTTCCGAA CAAACATGGAAAGGGGGTATTATCTGTTGGAAGTAAATAGCATTTTCAGTAGGCTGGCTGCAAGCCTGCAACTCTTGAATCAGTTACACACTTTTGATGGAACATACCCCC AATAGGCCACTTATACCAAGTGTATAGTAAAGTAGAACAGATATATCTGAAC GTTTTTTTTTTGTTATATATTTTAACC ATGTATAGTGATTGATATACAGACTAGTTACTGATGAATGGAATTCTTGCTCATAAAAAAAAA]




>consensus_5559#0
ATTCCCCCGCCTCATCTCCTCTCCTCTCCTCCCCCCTGCTTCTCCGACCAAAGCCGCGCC
GCGCATTCCGCCGCCATGTCCGCCGCGCTCCACACGCTCCCCGCCGTCGCCGCTGGCGGC
CTCGGCTGTCGGTGGCGGCGGCCCTCCGCGACGCTACGGGCGGCGAGCTCCGTGGGGACG
GCGTCGGTGGCGGTGTCCGTGAATGCGGAGACGCAGCAGCAGCGGCAGGTGGGTGTGGAG
GAGGAGGAGAAGAGGAGGGAGGATGCGGCGGAGGTGAGGACGGGCAGGGTGGTGGAGGCT
CTCTACGACGACGGGTTCGGCGGCGTCACGGTGAAGGACTACTTCGCGGCGGCCAGGGCC
GTCTCCAGCGACGACGGCGGCCCGCCGCGGTGGTTCTGCCCCGTCGACGCCGGCCGGCCG
GCCGGTGGACAACGCGCCGCTGCTGCTCTTCTTGCCAGGAACTGATGGTGTTGGAATGGG
GCTCATTTTGCACCACAAGTCTTTGGGAAGGGTATTCGAGGTTCGCTGCTTGCATATACC
AGTGAATGATCGTACGCCATTTGAAGGGTTGTTGCAGATTGTGGAAAATTCTATCAAATA
TGAGCATGCTATGTCACCAAACCGACCCATATATCTCATCGGGGACTCATTTGGAGGATG
CCTAGCACTTTCGGTGGCAGCTCGTAATCCACAAATTGATCTGGTTCTCATACTGATTAA
TCCAGCAACGTCCTTTGCAAAGACTCCGTTGCAGCCGATATTACCTGTGTTGGAAGCAAT
GCCAAGTGAACTTCATGTCACAGTTCCATATCTTCTCAGTTTTGTCATGGGCGATCCTCT
TAAAATGGCTATGGTCAGCGTTGAGAACAACCTTTCTCCTCCAAAAACTCTGCAGAAGTT
GTCAGATAGTCTCACTTCCATGCTGCCTTTGCTTTCAGAATTGGCAGATATCATACCAAG
GGATACTCTTTTCTGGAAACTCAAGCTGCTGAAGTCAGGAGCAGCCTACGCTAACTCTCG
TCTTCATGCTGTACAAGCTGAAGTTCTACTTCTTGCTAGTGGCAATGATAATCTTCTGCC
AAGTGGAGAAGAGGCAGATAGACTCTTCAAATCACTGAAAAACTGCAGAGTTCGGTACTT
CAAAGACAATGGCCATACACTACTGTTGGAGGACGGTGTTAATCTTTTATCAGTCATAAA
AGGAGTAAATATGTACCGCCGTGGCAGACAACGGGATCCTGTGACGGATTACATTCCCCC
GACATTGAGTGAGTTCAAGAAAACATTCGATGAAGATCACAAATTGTTTCACCTTGCATT
GAGCCCAGTCATGCTGTCTACCCTGAAGAATGGGAAGATTGTTCGTGGCCTTACTGGTGT
TCCTGACCAAGGTCCTGTCTTGTTTGTGGGTTATCATGCACTGATGGGGATCGAGTTGAG
TCCATTGTACGAGGAGTTCTTGAGAGAGAAGAGAACAAGTTTCCGTGGTATGGCTCACCC
AATTTTATTTGGAGGAAAACATGAGAGTTCGCGACAGGAGCTGTCTCGGTTCGATACAAT
TTCTATGTACGGTGGATTACCAGTCACTGCGATCAATATGTATAGGTTGTTTGAGAGAAA
TCAATTTGTTTTGCTCTATCCAGGCGGTGTGCGGGAAGCTCTTCACAGGAAGGGTGAAGC
ATACAAGTTGTTTTGGCCAGACCAACCAGAATTTGTAAGAATGGCAGCACGTTTTGGTGT
TACTATCATACCATTTGGTTTTGTAGGAGAAGATGATGTTTTAGAGTTGGTCGCCGACTA
CAATGATCAAAAGAACATTCCCTACCTTCGGGAATGGATTGAGTCGATTAACCGAGAAGC
CAAAAGAGTAAGGGATAGCGTCAAAGGAGAGGATGGAAATCAAGACGTTCACATACCTGC
TTTGCTCCCCAAAGTGCCAGGCCGGTTCTACTACCTATTTGGCAAACCAATCGAAATGAA
AGGTATGGATAATGTCGTCAGAGATAGGAAAAGTGCAAACGAAGTGTATTTGCATATCAA
ATCCGAAGTAGAGAGCTTAATGTCATATCTGAAGAGGAAGAGGGAGGAAGATCCTTACAG
AAGCATAGCGCAGCGTGCAGTGTACCAGGCATCTTGGGGTGCTTCTGCAGAGGTCCCAAC
ATTTGAACCATGAAGGTTGGGTGATCTCGTGGTACTGTGATTGAATGAGCATCGGCAATC
TTGTGTTCCGAAGCAAACATGGAAAGGGGGTATTATCTGTTGGAAGTAAATAGCATTTTC
AGTAGGCTGGCTGCAAGCCTGCAACTCTTGAATCAGTTACACATTTTGATGGAACATACC
CCCAAATAGGCCATTATACAAGTGTATAGTAAAGTAGAACAGATATATCTGAACAGTTTT
TTTTTTGTTATATATTTTAACCAATGTATAGTGATTGATATACAGACTAGTTACTGATGA
ATGGAATTCTTGCTCATAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)