These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1040 fasta sequence [GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGGTAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCAATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATATGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTAATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGATATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCATCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGTATTTATCCTCTTCTAAAAAA] [+] EMBL AK121277 [GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGGTAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCAATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATATGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTAATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTT ] [+] EMBL AU172653 [ TCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGATATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCATCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGTATTTATCCTCTTCTAAAAAA] consensusID : consensus_5623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA] [+] EMBL AU172652 [AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5623#0 GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGG 60 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 TAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTT 120 consensus_5623#1 --------------------------------------------AGCTAGATGGCTTCTT 16 **************** consensus_5623#0 TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG 180 consensus_5623#1 TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG 76 ************************************************************ consensus_5623#0 CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC 240 consensus_5623#1 CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC 136 ************************************************************ consensus_5623#0 TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA 300 consensus_5623#1 TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA 196 ************************************************************ consensus_5623#0 TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCA 360 consensus_5623#1 TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAG---- 252 ******************************************************** consensus_5623#0 ATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATA 420 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 TGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTA 480 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 ATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT 540 consensus_5623#1 -------------------------TACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT 287 *********************************** consensus_5623#0 GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC 600 consensus_5623#1 GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC 347 ************************************************************ consensus_5623#0 CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT 660 consensus_5623#1 CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT 407 ************************************************************ consensus_5623#0 TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATT 720 consensus_5623#1 TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA------------------ 449 ****************************************** consensus_5623#0 TTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATT 780 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 TATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATT 840 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 ACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGAT 900 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 ATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCA 960 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 TCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGT 1020 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 ATTTATCCTCTTCTAAAAAA 1040 consensus_5623#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||