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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1289 fasta sequence
[CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGGCGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACCCCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGGGCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGTGGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGGTCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTT-GCAGTCCAT-GGAAGAGCAAGCTAAACTA-CGTGATGCTCT-GAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCATTTAACACTTGTCTTGTAAAGTGGTCGTT]
[+] EMBL AK065995 [CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGGCGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACCCCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGGGCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGTGGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGGTCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTT GCAGTCCAT GGAAGAGCAAGCTAAACTA CGTGATGCTCT GAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCATTTAACACTTGTCTTGTAAAGTGGTCGTT]
[+] EMBL AF465825 [ cgTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCCCGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGGCAGTCCATGGGAAGAGCAAGCT AACTACCGTGATGCTCTGGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGG AATCCCTTCAAT GGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAG TAACTATGTTAACCATTTAACACTTGTC TGTAAAaaa ]
consensusID : consensus_5625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC]
[+] EMBL AA751846 [GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5625#0 CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGG 60
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 CGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCG 120
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 GAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCC 180
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 TTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACC 240
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 CCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGG 300
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 GCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGT 360
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 GGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGG 420
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 TCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCG 480
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 GACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCC 540
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 AAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGG-AAAGGAA 599
consensus_5625#1 GAATTCGGCACGAG-----TGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAA 55
* ** * *** ********************************* *******
consensus_5625#0 GATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCAC 659
consensus_5625#1 GATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCAC 115
************************************************************
consensus_5625#0 GCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAG 719
consensus_5625#1 GCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAG 175
************************************************************
consensus_5625#0 AGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAA 779
consensus_5625#1 AGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAA 235
************************************************************
consensus_5625#0 TGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACAT 839
consensus_5625#1 TGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACAT 295
************************************************************
consensus_5625#0 GAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAA 899
consensus_5625#1 GAACGGG-AATCCCTTCAATGG-TGGACTCCAACAGCAGATTCCGCCCTATTACACGCAA 353
******* ************** *************************************
consensus_5625#0 CAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCAT 959
consensus_5625#1 CAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTN 413
******************************************* ****** **** **
consensus_5625#0 CCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAAC 1019
consensus_5625#1 CCANNC------------------------------------------------------ 419
*** *
consensus_5625#0 GACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCA 1079
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 ACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAA 1139
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 TAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCC 1199
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 TCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACC 1259
consensus_5625#1 ------------------------------------------------------------
consensus_5625#0 ATTTAACACTTGTCTTGTAAAGTGGTCGTT 1289
consensus_5625#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||