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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 565 cluster # 565       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_565#0 length = 707 sequences # 1  
consensus_565#1 length = 377 sequences # 1  

consensusID : consensus_565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence
                              [CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGAGAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCACAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG]

[+] EMBL AK060215             [CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGAGAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCACAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG]


>consensus_565#0 CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAA TTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAAT GTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGA TTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAG GATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCA TGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGA GAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCA CAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT CGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAG TGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGA ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG



consensusID : consensus_565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATGCTCGTGCAAAAAA]

[+] EMBL BI796122             [GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATGCTCGTGCAAAAAA]


>consensus_565#1 GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTC CCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTA CAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTG GTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTA TGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTT CGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTT GATGCTCGTGCAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_565#0      CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAA 60
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAAT 120
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      GTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGA 180
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAG 240
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      GATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCA 300
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGA 360
consensus_565#1      --------------------------------------------------GACTACCCGC 10
                                                                          * *  * 

consensus_565#0      GAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCA 420
consensus_565#1      TGAGTTTAAGCATATAAATAAGCCGG-AGGAGAAGAAACTTACGAGGATTCCCC---TAG 66
                       * ***  * *   ** *   *    **   *    ** * *  * *  ****      

consensus_565#0      CAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT 480
consensus_565#1      TAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT 126
                      ***********************************************************

consensus_565#0      CGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAG 540
consensus_565#1      CGCTGAGCTCCTTGTTTAGTAACAAA-TGTACAGGCAA-TCTCAACATTCCTACTGGTAG 184
                     ************************** *********** *********************

consensus_565#0      TGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA 600
consensus_565#1      TGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA 244
                     ****************** *****************************************

consensus_565#0      GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGA 660
consensus_565#1      GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGA 304
                     ****************************************** ************ ****

consensus_565#0      ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG------------- 707
consensus_565#1      ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATG 364
                     ***********************************************             

consensus_565#0      -------------
consensus_565#1      CTCGTGCAAAAAA 377
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)