These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGAGAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCACAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG] [+] EMBL AK060215 [CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGAGAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCACAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG] consensusID : consensus_565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATGCTCGTGCAAAAAA] [+] EMBL BI796122 [GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATGCTCGTGCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_565#0 CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAA 60 consensus_565#1 ------------------------------------------------------------ consensus_565#0 TTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAAT 120 consensus_565#1 ------------------------------------------------------------ consensus_565#0 GTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGA 180 consensus_565#1 ------------------------------------------------------------ consensus_565#0 TTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAG 240 consensus_565#1 ------------------------------------------------------------ consensus_565#0 GATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCA 300 consensus_565#1 ------------------------------------------------------------ consensus_565#0 TGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGA 360 consensus_565#1 --------------------------------------------------GACTACCCGC 10 * * * consensus_565#0 GAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCA 420 consensus_565#1 TGAGTTTAAGCATATAAATAAGCCGG-AGGAGAAGAAACTTACGAGGATTCCCC---TAG 66 * *** * * ** * * ** * ** * * * * **** consensus_565#0 CAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT 480 consensus_565#1 TAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT 126 *********************************************************** consensus_565#0 CGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAG 540 consensus_565#1 CGCTGAGCTCCTTGTTTAGTAACAAA-TGTACAGGCAA-TCTCAACATTCCTACTGGTAG 184 ************************** *********** ********************* consensus_565#0 TGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA 600 consensus_565#1 TGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA 244 ****************** ***************************************** consensus_565#0 GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGA 660 consensus_565#1 GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGA 304 ****************************************** ************ **** consensus_565#0 ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG------------- 707 consensus_565#1 ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATG 364 *********************************************** consensus_565#0 ------------- consensus_565#1 CTCGTGCAAAAAA 377 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||