cluster # 5687

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Oryza sativa
cluster # 5687 cluster # 5687 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5687#0 length = 969 sequences # 2

consensus_5687#1 length = 634 sequences # 1

consensusID : consensus_5687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 969
fasta sequence

                              [GTGGAAGCGGAGGAGGGGGTGGTGGGTATGGGGACGCGGGTGGGGCGGTGGAGGAGAAGGCTTGCCCCTGCGGCGCCGGGAGTTGCCTAGTGCTCACATCCAACACGCCCAGGAATCCGGGCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGAGGTTGCAACTACTTTGAGTGGTGTGATAACCCATCTCCAGGTCCTGCAAATGTCAGTGGCAATACTGTTTTTCAGTCAGATACATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAAAGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGAGGTAGCTCTTGTGGCTATTTCAAGTGGTGTGATGAACAACAGCTTAGGACAGCTGCTCCACTGCAAGCTTCAACACAATATCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGAGGAGCTCCTCCGCCTGCTTCAAATGCGGGCAAGAGAACCATTGGGCAAAGGACTGCCCAAATCAATCTTCAGATCCTTATCCTGACAAAGGTGGGAGAACATTTACTTCTGCAAGCTCTCCCGATGCGTGTTTCAAGTGTGGTAAGAGCGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGTTCTAGTACCGTCTCCAGCCATGTCAAGTCCTCTTCTACTTTGGGCTCATGGAACAGCCACAGATACTGATAGCCGGTACCTGTGAACTCAATTGAACTGACATGGACATGCTGTACGAAACTTGGACAAATGCACATGACACGTGTTGCTTAGGTACGCATTCTTGCCAAATTCCTTTTGCTACTTTTAAGTTTGGTAATGAGTTTTTACTGAGGACATTTCCGTCTTCATGCTGGTTGCTCTGGGAATCTTTTGTCATCTGCTCTAGACATTTCCACTGATGTAGATATAAGAAAAATCAGCACTA]

[+] EMBL AK106487             [GTGGAAGCGGAGGAGGGGGTGGTGGGTATGGGGACGCGGGTGGGGCGGTGGAGGAGAAGGCTTGCCCCTGCGGCGCCGGGAGTTGCCTAGTGCTCACATCCAACACGCCCAGGAATCCGGGCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGAGGTTGCAACTACTTTGAGTGGTGTGATAACCCATCTCCAGGTCCTGCAAATGTCAGTGGCAATACTGTTTTTCAGTCAGATACATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAAAGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGAGGTAGCTCTTGTGGCTATTTCAAGTGGTGTGATGAACAACAGCTTAGGACAGCTGCTCCACTGCAAGCTTCAACACAATATCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGAGGAGCTCCTCCGCCTGCTTCAAATGCGGGCAAGAGAACCATTGGGCAAAGGACTGCCCAAATCAATCTTCAGATCCTTATCCTGACAAAGGTGGGAGAACATTTACTTCTGCAAGCTCTCCCGATGCGTGTTTCAAGTGTGGTAAGAGCGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGTTCTAGTACCGTCTCCAGCCATGTCAAGTCCTCTTCTACTTTGGGCTCATGGAACAGCCACAGATACTGATAGCCGGTACCTGTGAACTCAATTGAACTGACATGGACATGCTGTACGAAACTTGGACAAATGCACATGACACGTGTTGCTTAGGTACGCATTCTTGCCAAATTCCTTTTGCTACTTTTAAGTTTGGTAATGAGTTTTTACTGAGGACATTTCCGTCTTCATGCTGGTTGCTCTGGGAATCTTTTGTCATCTGCTCTAGACATTTCCACTGATGTAGATATAAGAAAAATCAGCACTA]
[+] EMBL C27706               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTGGGCAAAGGACTGCCCAAATCAATCTTCAGATCCTTATCCTGACAAAGGTGGGAGAACATTTACTTCTGCAAGCTCTCCCGATGCGTGTTTCAAGTGTGGTAAGAGCGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGTTCTAGTACCGTCTCCAGCCATGTCAAGTCCTCTTCTACTTTGGGCTCATGGAACAGCCACAGATACTGATAGCCGGTACCTGTGAACTCAATTGAACTGACATGGACATGCTGTACGAAACTTGGACAAATGCACATGACACGTGTTGCTTAGGTACGCATTCTTGCCAAATTCCTTTTGCTACTTTTAAGTTTGGTAATGAGTTTTTACTGAGGACATTTCCGTCTTCATGCTGGTTGCT                                                                  ]




>consensus_5687#0
GTGGAAGCGGAGGAGGGGGTGGTGGGTATGGGGACGCGGGTGGGGCGGTGGAGGAGAAGG
CTTGCCCCTGCGGCGCCGGGAGTTGCCTAGTGCTCACATCCAACACGCCCAGGAATCCGG
GCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGAGGTTGCAACTACTTTGAGTGGT
GTGATAACCCATCTCCAGGTCCTGCAAATGTCAGTGGCAATACTGTTTTTCAGTCAGATA
CATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAA
AGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGAGGTAGCT
CTTGTGGCTATTTCAAGTGGTGTGATGAACAACAGCTTAGGACAGCTGCTCCACTGCAAG
CTTCAACACAATATCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGAGGAGCT
CCTCCGCCTGCTTCAAATGCGGGCAAGAGAACCATTGGGCAAAGGACTGCCCAAATCAAT
CTTCAGATCCTTATCCTGACAAAGGTGGGAGAACATTTACTTCTGCAAGCTCTCCCGATG
CGTGTTTCAAGTGTGGTAAGAGCGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTG
GTTCTAGTACCGTCTCCAGCCATGTCAAGTCCTCTTCTACTTTGGGCTCATGGAACAGCC
ACAGATACTGATAGCCGGTACCTGTGAACTCAATTGAACTGACATGGACATGCTGTACGA
AACTTGGACAAATGCACATGACACGTGTTGCTTAGGTACGCATTCTTGCCAAATTCCTTT
TGCTACTTTTAAGTTTGGTAATGAGTTTTTACTGAGGACATTTCCGTCTTCATGCTGGTT
GCTCTGGGAATCTTTTGTCATCTGCTCTAGACATTTCCACTGATGTAGATATAAGAAAAA
TCAGCACTA

consensusID : consensus_5687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CGGGCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGANGTTGCAACTACTTTGAGTGGTGTGATAACCCATCTCCAGGTCCTGCNAATGTCAGTGGCAATACTGTTTTTCAGTCAGATACATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAAAGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGCATTTCATATCTCTTTCTTAATGTACGATCGGGACATATCTCCAGGGAGGTAGCTCTTGTGGCTATTTCAAGTGGTGTGATGAACAACAGCTTAAGACAGCTGCTCCACTGCAAGCTTCAACACAATATCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGANGANCTCCTCCGCCTGCTTCAAATGCGGGCAAGANAANCATTGGGCCAANGACTGCCCAAATCAATCTTCANATCCTTATCCTGACAAAGGTGGGANAACATTTNCTTCTGCAACTCTCCCNATGCGTGTTTCAAATGTGGTAAGAACGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGGTCTAGTACCGTCTCCACCATGTCAATCCTCTTCNACTTTGGGC]

[+] EMBL BE228303             [CGGGCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGANGTTGCAACTACTTTGAGTGGTGTGATAACCCATCTCCAGGTCCTGCNAATGTCAGTGGCAATACTGTTTTTCAGTCAGATACATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAAAGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGCATTTCATATCTCTTTCTTAATGTACGATCGGGACATATCTCCAGGGAGGTAGCTCTTGTGGCTATTTCAAGTGGTGTGATGAACAACAGCTTAAGACAGCTGCTCCACTGCAAGCTTCAACACAATATCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGANGANCTCCTCCGCCTGCTTCAAATGCGGGCAAGANAANCATTGGGCCAANGACTGCCCAAATCAATCTTCANATCCTTATCCTGACAAAGGTGGGANAACATTTNCTTCTGCAACTCTCCCNATGCGTGTTTCAAATGTGGTAAGAACGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGGTCTAGTACCGTCTCCACCATGTCAATCCTCTTCNACTTTGGGC]




>consensus_5687#1
CGGGCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGANGTTGCAACTACTTTGAGT
GGTGTGATAACCCATCTCCAGGTCCTGCNAATGTCAGTGGCAATACTGTTTTTCAGTCAG
ATACATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCA
CAAAGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGCATTT
CATATCTCTTTCTTAATGTACGATCGGGACATATCTCCAGGGAGGTAGCTCTTGTGGCTA
TTTCAAGTGGTGTGATGAACAACAGCTTAAGACAGCTGCTCCACTGCAAGCTTCAACACA
ATATCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGANGANCTCCTCCGCCTG
CTTCAAATGCGGGCAAGANAANCATTGGGCCAANGACTGCCCAAATCAATCTTCANATCC
TTATCCTGACAAAGGTGGGANAACATTTNCTTCTGCAACTCTCCCNATGCGTGTTTCAAA
TGTGGTAAGAACGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGGTCTAGTACC
GTCTCCACCATGTCAATCCTCTTCNACTTTGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5687#0      GTGGAAGCGGAGGAGGGGGTGGTGGGTATGGGGACGCGGGTGGGGCGGTGGAGGAGAAGG 60
consensus_5687#1      ------------------------------------------------------------
                                                                                  

consensus_5687#0      CTTGCCCCTGCGGCGCCGGGAGTTGCCTAGTGCTCACATCCAACACGCCCAGGAATCCGG 120
consensus_5687#1      ---------------------------------------------------------CGG 3
                                                                               ***

consensus_5687#0      GCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGAGGTTGCAACTACTTTGAGTGGT 180
consensus_5687#1      GCCGCAAGTTCTACAGGTGCCCCATGCGGGACAATGGANGTTGCAACTACTTTGAGTGGT 63
                      ************************************** *********************

consensus_5687#0      GTGATAACCCATCTCCAGGTCCTGCAAATGTCAGTGGCAATACTGTTTTTCAGTCAGATA 240
consensus_5687#1      GTGATAACCCATCTCCAGGTCCTGCNAATGTCAGTGGCAATACTGTTTTTCAGTCAGATA 123
                      ************************* **********************************

consensus_5687#0      CATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAA 300
consensus_5687#1      CATCAGTTGCGCATATGCTTTGCCCCTGTGGTGCTGGAGCTTGCTTAATTCTCACCACAA 183
                      ************************************************************

consensus_5687#0      AGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGG-------- 352
consensus_5687#1      AGACAGGAAAGAATGTTGGAAGGCAGTTTTATCGTTGCCCAGCTAATCAGGGCATTTCAT 243
                      ****************************************************        

consensus_5687#0      ---------------------------------------AGGTAGCTCTTGTGGCTATTT 373
consensus_5687#1      ATCTCTTTCTTAATGTACGATCGGGACATATCTCCAGGGAGGTAGCTCTTGTGGCTATTT 303
                                                             *********************

consensus_5687#0      CAAGTGGTGTGATGAACAACAGCTTAGGACAGCTGCTCCACTGCAAGCTTCAACACAATA 433
consensus_5687#1      CAAGTGGTGTGATGAACAACAGCTTAAGACAGCTGCTCCACTGCAAGCTTCAACACAATA 363
                      ************************** *********************************

consensus_5687#0      TCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGAGGAGCTCCTCCGCCTGCTT 493
consensus_5687#1      TCATACTGATGTTGCTTCAAGTGGCCAAATTCCCAGCAAGANGANCTCCTCCGCCTGCTT 423
                      ***************************************** ** ***************

consensus_5687#0      CAAATGCGGGCAAGAGAACCATTGGGCAAAGGACTGCCCAAATCAATCTTCAGATCCTTA 553
consensus_5687#1      CAAATGCGGGCAAGANAANCATTGGGCCAANGACTGCCCAAATCAATCTTCANATCCTTA 483
                      *************** ** ******** ** ********************* *******

consensus_5687#0      TCCTGACAAAGGTGGGAGAACATTTACTTCTGCAAGCTCTCCCGATGCGTGTTTCAAGTG 613
consensus_5687#1      TCCTGACAAAGGTGGGANAACATTTNCTTCTGCAA-CTCTCCCNATGCGTGTTTCAAATG 542
                      ***************** ******* ********* ******* ************* **

consensus_5687#0      TGGTAAGAGCGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGTTCTAGTACCGT 673
consensus_5687#1      TGGTAAGAACGGGCACTGGTCCCGTGATTGCCCCACCGCAAATTGTGGGTCTAGTACCGT 602
                      ******** *************************************** ***********

consensus_5687#0      CTCCAGCCATGTCAAGTCCTCTTCTACTTTGGGCTCATGGAACAGCCACAGATACTGATA 733
consensus_5687#1      CTCCA-CCATGTCAA-TCCTCTTCNACTTTGGGC-------------------------- 634
                      ***** ********* ******** *********                          

consensus_5687#0      GCCGGTACCTGTGAACTCAATTGAACTGACATGGACATGCTGTACGAAACTTGGACAAAT 793
consensus_5687#1      ------------------------------------------------------------
                                                                                  

consensus_5687#0      GCACATGACACGTGTTGCTTAGGTACGCATTCTTGCCAAATTCCTTTTGCTACTTTTAAG 853
consensus_5687#1      ------------------------------------------------------------
                                                                                  

consensus_5687#0      TTTGGTAATGAGTTTTTACTGAGGACATTTCCGTCTTCATGCTGGTTGCTCTGGGAATCT 913
consensus_5687#1      ------------------------------------------------------------
                                                                                  

consensus_5687#0      TTTGTCATCTGCTCTAGACATTTCCACTGATGTAGATATAAGAAAAATCAGCACTA 969
consensus_5687#1      --------------------------------------------------------