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Oryza sativa
cluster # 5695 cluster # 5695       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5695#0 length = 1120 sequences # 3  

consensusID : consensus_5695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1120
fasta sequence
                              [ACTCAGACACGACTAGGATGTATCAATGTAGACTCWRGACCTWGATTGTGCAGAAGRCCTCCTCCAATCCGTTCCATCGGGAACATGTAAGTTGTTGTTCACTATATTGAACTTCTTGGTATTGAGCTTG-TGCTTGTTCTTGTTGTTGTGTCAAAGTCGGTTTCAACAATTGAAGGCRATTTTTCATCTGTACCAAATGTTACATCGCGCCTCGCGTCTTTACCCCTCATGTACTCGCTTCGTTTAGCTAGCAGCGGCAGCACGGGACTCGGCTTCGCGCTCGGCCGGCTCGGCGGGAGGAGTGGCGGCGGCGGCGGCGGTGGTGGTTTAGCGCCCGCGTCGGCGTCGTCGTCGTCGGTGTGTATCCGCTCGCACGAGGAGGACCGGTCTCCGTGACGCCCAACGCCGCGGCGCCGACTCCGGGCGAGCAGGGCGTCGCGATGGAGCA-GGCAAGCAGCAGCACCAGCCACCACCTCCGTCGCAGCCGCA-CCGCAGCAGGAGAAGCGCGGCTCCCGCGACGACGACATGCACAAGACCACAGGGGACGTGATGACCCACTCTTTCGGGGAGGGATACTAGACGCGGTCGGACGAGGAAGGGTTCGGTGGCGTGTACGGACAGAACGACCCGGTGTTCAACCCTGGGACCGAGGTGCACCCCAGCCACCCTGAGTACGACACGTCGCAGGGGTCGGAGGTGAAGGAGAAGGAGAAGGCGCGCCACCATAAGGACGACAAGCACGCGACCTAAGCCTAGCAGTTGGGGGCTGGATTAGGTCCTAATCGTAGTTTAGTCGGGCATGACGGGGATCACCCCCATCATCACCTGTGCATCCACGTTGCCCTATCTTTGATGGGCACTAGTTGTATCTTTTGCTTCTGAACTGTTTTGATGCATTTGTTTTATTCCTTAGATGTGATGTAAAATCTCTACAGTACTTAATTAGCTATGTACTGGTACTGTGAGTTCTCCAGCGCTTGTGTCTCCTGGTGTGTGTGATCATGTAATGATGAGTCGATTCATATATATACTCCCTCCTCCTCCGTCATCCCTTCTATAGGATTTTCAAAAAACATCCCTTCTATAGGATTTGTATAATAAATCTGTAATAAAAGAGATT]

[-] EMBL AA751239             [ACTCAGACACGACTAGGATGTATCAATGTAGACTCWRGACCTWGATTGTGCAGAAGRCCTCCTCCAATCCGTTCCATCGGGAACATGTAAGTTGTTGTTCACTATATTGAACTTCTTGGTATTGAGCTTGTTGCTTGTTCTTGTTGTTGTGTCAAAGTCGGTTTCAACAATTGAAGGCRATTTTTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BQ164642             [                                                                                            TGTTGTTCACTATATTGAACTTCTTGGTATTGAGCTTG TGCTTGTTCTTGTTGTTGTGTCAAAGTCGGTTTCAACAATTGAAGGCCATTTTTCACATGTACCAAATGTTACATCGCGCCTCGCGTCTTTACCCCTCATGTACTCGCTTCGTTTAGCTAGCAGCGGCAGCACGGGACTCGGCTTCGCGCTCGGCCGGCTCGGCGGGAGGAGTGGCGGCGGCGGCGGCGGTGGTGGTTTAGCGCCCGCGTCGGCGTCGTCGTCGTCGGTGTGTATCCGCTCGCACGAGGAGGACCGGTCTCCGTGACGCCCAACGCCGCGGCGCCGACTCCGGGCGAGCAGGGCGTCGCGATGGAGCA GGCAAGCAGCAGCACCAGCCACCACCTCCGTCGCAGCCGCA CCGCAGCAGGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK107276             [                                                                                                                                                                                                 gCAAATGTTACATCGCGCCTCGCGTCTTTACCCCTCATGTACTCGCTTCGTTTAGCTAGCAGCGGCAGCACGGGACTCGGCTTCGCGCTCGGCCGGCTCGGCGGGAGGAGTGGCGGCGGCGGCGGCGGTGGTGGTTTAGCGCCCGCGTCGGCGTCGTCGTCGTCGGTG GTATCCGCTCGCACGAGGAGGACC GTCTCCGTGACGCCCAACGCCGCGGCGCCGACTCCGGGCGAGCAGGGCGTCGCGATGGAGCAGGGCAAGCAGCAGCACCAGCCACCACCTCCGTCGCAGCCGCAGCCGCAGCAGGAGAAGCGCGGCTCCCGCGACGACGACATGCACAAGACCACAGGGGACGTGATGACCCACTCTTTCGGGGAGGGATACTAGACGCGGTCGGACGAGGAAGGGTTCGGTGGCGTGTACGGACAGAACGACCCGGTGTTCAACCCTGGGACCGAGGTGCACCCCAGCCACCCTGAGTACGACACGTCGCAGGGGTCGGAGGTGAAGGAGAAGGAGAAGGCGCGCCACCATAAGGACGACAAGCACGCGACCTAAGCCTAGCAGTTGGGGGCTGGATTAGGTCCTAATCGTAGTTTAGTCGGGCATGACGGGGATCACCCCCATCATCACCTGTGCATCCACGTTGCCCTATCTTTGATGGGCACTAGTTGTATCTTTTGCTTCTGAACTGTTTTGATGCATTTGTTTTATTCCTTAGATGTGATGTAAAATCTCTACAGTACTTAATTAGCTATGTACTGGTACTGTGAGTTCTCCAGCGCTTGTGTCTCCTGGTGTGTGTGATCATGTAATGATGAGTCGATTCATATATATACTCCCTCCTCCTCCGTCATCCCTTCTATAGGATTTTCAAAAAACATCCCTTCTATAGGATTTGTATAATAAATCTGTAATAAAAGAGATT]


>consensus_5695#0 ACTCAGACACGACTAGGATGTATCAATGTAGACTCWRGACCTWGATTGTGCAGAAGRCCT CCTCCAATCCGTTCCATCGGGAACATGTAAGTTGTTGTTCACTATATTGAACTTCTTGGT ATTGAGCTTGTGCTTGTTCTTGTTGTTGTGTCAAAGTCGGTTTCAACAATTGAAGGCRAT TTTTCATCTGTACCAAATGTTACATCGCGCCTCGCGTCTTTACCCCTCATGTACTCGCTT CGTTTAGCTAGCAGCGGCAGCACGGGACTCGGCTTCGCGCTCGGCCGGCTCGGCGGGAGG AGTGGCGGCGGCGGCGGCGGTGGTGGTTTAGCGCCCGCGTCGGCGTCGTCGTCGTCGGTG TGTATCCGCTCGCACGAGGAGGACCGGTCTCCGTGACGCCCAACGCCGCGGCGCCGACTC CGGGCGAGCAGGGCGTCGCGATGGAGCAGGCAAGCAGCAGCACCAGCCACCACCTCCGTC GCAGCCGCACCGCAGCAGGAGAAGCGCGGCTCCCGCGACGACGACATGCACAAGACCACA GGGGACGTGATGACCCACTCTTTCGGGGAGGGATACTAGACGCGGTCGGACGAGGAAGGG TTCGGTGGCGTGTACGGACAGAACGACCCGGTGTTCAACCCTGGGACCGAGGTGCACCCC AGCCACCCTGAGTACGACACGTCGCAGGGGTCGGAGGTGAAGGAGAAGGAGAAGGCGCGC CACCATAAGGACGACAAGCACGCGACCTAAGCCTAGCAGTTGGGGGCTGGATTAGGTCCT AATCGTAGTTTAGTCGGGCATGACGGGGATCACCCCCATCATCACCTGTGCATCCACGTT GCCCTATCTTTGATGGGCACTAGTTGTATCTTTTGCTTCTGAACTGTTTTGATGCATTTG TTTTATTCCTTAGATGTGATGTAAAATCTCTACAGTACTTAATTAGCTATGTACTGGTAC TGTGAGTTCTCCAGCGCTTGTGTCTCCTGGTGTGTGTGATCATGTAATGATGAGTCGATT CATATATATACTCCCTCCTCCTCCGTCATCCCTTCTATAGGATTTTCAAAAAACATCCCT TCTATAGGATTTGTATAATAAATCTGTAATAAAAGAGATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)