These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [ATATATCTTCCAATATACCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCCCAAGATGACACCAGCTTAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTGGGCATTGCAGTGTCCCATTGGCCCAGTGCCCTCTGACA] [+] EMBL CB682522 [ATATATCTTCCAATATACCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG ] [+] EMBL CB682520 [ tGAGGAGAAAGCCAATGGTTCAGGATTATTTAAAAAATAAAAAAATAGCATACCCCATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCCCAAGATGACACCAGCTTAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTGGGCATTGCAGTGTCCCATTGGCCCAGTGCCCTCTGACA] consensusID : consensus_5703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATACTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAGTACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTGTACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATGGAGATGCCTTCCCGTACCTTTTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATCAGAGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACCCTGTTTAGTCTTACAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG] [+] EMBL CB628039 [ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATACTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAGTACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTGTACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATGGAGATGCCTTCCCGTACCTTTTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATCAGAGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACCCTGTTTAGTCTTACAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5703#0 -------------------------------------------ATATATCTTCCAATATA 17 consensus_5703#1 ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATA 60 ***************** consensus_5703#0 CCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAA 77 consensus_5703#1 CTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAA 120 * *** ************* ************************************** consensus_5703#0 AAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAG 137 consensus_5703#1 AAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAG 180 ******* **** ***************************************** ***** consensus_5703#0 GATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAG 197 consensus_5703#1 GATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAG 240 ******************************** ***** *** ************** ** consensus_5703#0 TACGTGTTA-TGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTG 256 consensus_5703#1 TACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTG 300 ********* **** ****** ******************** ******** ******** consensus_5703#0 TACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATG 316 consensus_5703#1 TACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATG 360 ******* *********** ******************* ********** ******** consensus_5703#0 TAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTT 376 consensus_5703#1 GAGATGC----------------------------------------CTTCCCGTACCTT 380 ****** **** ******* consensus_5703#0 TTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTC 436 consensus_5703#1 TTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATCAGAGGAAGGGCACGGTCTTC 440 ********** ***************************** * ***************** consensus_5703#0 GATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAA 496 consensus_5703#1 GATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAA 500 ************************************************************ consensus_5703#0 ACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGT 556 consensus_5703#1 ACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACCCTGTTTAGTCTTACAAAGGT 560 ********** ****************** *********************** ****** consensus_5703#0 GAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCCCAAGATGACACCAGCT 616 consensus_5703#1 GAGGTATGGCACATGTGATGCTAACAGTGACAGG-------------------------- 594 ********************************** consensus_5703#0 TAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTGGGCATTGCAGTGTCCC 676 consensus_5703#1 ------------------------------------------------------------ consensus_5703#0 ATTGGCCCAGTGCCCTCTGACA 698 consensus_5703#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||