These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [GAAGAAATTCCAGGATATGTATTCTTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGGTCTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTTTCTTTTCTGTATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTACTCCTGCGCCCCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATACTAACTTGAAGCCATTGGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAGGCCTAGAGGTTTAGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGTTCAGCTGTAGGATATTCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTATCAGTCACCAATCCTGCTAACCCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAAAAGGCAGATCCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCCGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGGAGCTATCAACTACCAAAGNGACTTTTTTTTTTTTTTTGCCACCATCAGTTCAGNGGGAGTAGAGGAGTCGTCCCTCATGCAGATGGTATCTTACCGGGAGNTATACTGGATTTTAAGNTGNCAATTTTGNCCCATCTTAACTACCATGCTGGAGACTAC] [+] EMBL CA766106 [GAAGAAATTCCAGGATATGTATTCTTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGGTCTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTTTCTTTTCTGTATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTACTCCTGCGCCCCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATACTAACTTGAAGCCATTGGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAGGCCTAGAGGTTTAGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGTTCAGCTGTAGGATATTCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTATCAGTCACCAATCCTGCTAACCCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAAAAGGCAGATCCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCCGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGGAGCTATCAACTACCAAAGNGACTTTTTTTTTTTTTTTGCCACCATCAGTTCAGNGGGAGTAGAGGAGTCGTCCCTCATGCAGATGGTATCTTACCGGGAGNTATACTGGATTTTAAGNTGNCAATTTTGNCCCATCTTAACTACCATGCTGGAGACTAC] consensusID : consensus_5726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [ATGTTCAGCTGTAGGATATTTTTCAGAAATTAGTTCGCCCAATAATGCTGGGATTTCCCATTTATCAGTCCCCAATCCTGTTACCCCAGAAATTCCTTGGGCTGTTACTTTCATCATCCATCGCCATTAGAAAAAGGCAGATCCCTCAGGCCGTGCATTTGCCAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCACCTTGAGGGGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTTTGTAGCATTCCATCCACCAGGAGCTATCAACTACCAAGTGCCTTTTTTTTTTTTGCCCCCATCAGTTCAGTGGAGTAGGGGAGTGGTCCTCATGCAGATGTTATTTTACTGTAGTTATACGGATTTTAAGTTGCCAATTTTGCCCCTTTTTAATTCCCATGCTGTAGATTATTATGAAGTTTGGCCCCCCCGGCAACTTCAATTTTGCTGTAATGCCAAGGGGAGCCCGGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTCCCTGTGACTTCTGCAAATGAATGGAACAGGGG] [-] EMBL CB627867 [ATGTTCAGCTGTAGGATATTTTTCAGAAATTAGTTCGCCCAATAATGCTGGGATTTCCCATTTATCAGTCCCCAATCCTGTTACCCCAGAAATTCCTTGGGCTGTTACTTTCATCATCCATCGCCATTAGAAAAAGGCAGATCCCTCAGGCCGTGCATTTGCCAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCACCTTGAGGGGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTTTGTAGCATTCCATCCACCAGGAGCTATCAACTACCAAGTGCCTTTTTTTTTTTTGCCCCCATCAGTTCAGTGGAGTAGGGGAGTGGTCCTCATGCAGATGTTATTTTACTGTAGTTATACGGATTTTAAGTTGCCAATTTTGCCCCTTTTTAATTCCCATGCTGTAGATTATTATGAAGTTTGGCCCCCCCGGCAACTTCAATTTTGCTGTAATGCCAAGGGGAGCCCGGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTCCCTGTGACTTCTGCAAATGAATGGAACAGGGG] consensusID : consensus_5726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGAGCTATCAACTACCAAGTGACTTTTTTTTTTTTTTGCCACCATCAGTTCCGTGGAGTAGAGGAGTCCGCCTCATGCAGATGTTATCTTACTGTAGTTATACTGATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCATGCTGTAGACTACTATGAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAAGAGGAGCCCTGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTACCTGTGACTACTGCAAATGAATGGAACAAGAAACGCACGTCTTCAAAAAGCGGC] [-] EMBL AU225556 [CATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGAGCTATCAACTACCAAGTGACTTTTTTTTTTTTTTGCCACCATCAGTTCCGTGGAGTAGAGGAGTCCGCCTCATGCAGATGTTATCTTACTGTAGTTATACTGATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCATGCTGTAGACTACTATGAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAAGAGGAGCCCTGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTACCTGTGACTACTGCAAATGAATGGAACAAGAAACGCACGTCTTCAAAAAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5726#1 ------------------------------------------------------------ consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 GAAGAAATTCCAGGATATGTATTCTTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGGT 60 consensus_5726#1 ------------------------------------------------------------ consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 CTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTTTCTTTTCTG 120 consensus_5726#1 ------------------------------------------------------------ consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 TATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTACTCCTGCGCC 180 consensus_5726#1 ------------------------------------------------------------ consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 CCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATACTAACTTGAA 240 consensus_5726#1 ------------------------------------------------------------ consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 GCCATTGGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAGGCCTAGAGGTTT 300 consensus_5726#1 -----------------------------------------------ATGTTCAGCTGTA 13 consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 AGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGTTCAGCTGTA 360 consensus_5726#1 GGATATTTTTCAGAAATTAGTTCGCCCAATAATGCTGGGATTTCCCATTTATCAGTCCCC 73 consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 GGATATTCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTATCAGTCACC 420 consensus_5726#1 AATCCTGTTACCCCAGAAATTCCTTGGGCTGTTACTTTCATCATCCATCGCCATTAGAAA 133 consensus_5726#2 ------------------------------------------------------------ consensus_5726#0 AATCCTGCTAACCCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAA 480 consensus_5726#1 AAGGCAGATCCCTCAGGCCGTGCATTTGCCAATTTGGCCCTGCTTCAGGCTGAAATTGAT 193 consensus_5726#2 ----------CATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGAT 50 consensus_5726#0 AAGGCAGATCCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAATTGAT 540 * ***** ********** ************************** **** consensus_5726#1 TGGTCCCATCACCTTGAGGGGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGG 253 consensus_5726#2 TGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGG 110 consensus_5726#0 TGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCCGAACAAGATTGGG 600 *********** ***** * ************************** ************* consensus_5726#1 ACATCAAACTTTTGTAGCATTCCATCCACCAGG-AGCTATCAACTACCAA-GTGCCTTTT 311 consensus_5726#2 ACATCAAACTTCTGTAGCATTACATCCAACAGG-AGCTATCAACTACCAA-GTGACTTTT 168 consensus_5726#0 ACATCAAACTTCTGTAGCATTACATCCAACAGGGAGCTATCAACTACCAAAGNGACTTTT 660 *********** ********* ****** **** **************** * * ***** consensus_5726#1 TTTTTTT---TGCCCCCATCAGTTCAGTGG-AGTAGGGGAGTGGTCC-TCATGCAGATGT 366 consensus_5726#2 TTTTTTTTT-TGCCACCATCAGTTCCGTGG-AGTAGAGGAGTCCGCC-TCATGCAGATGT 225 consensus_5726#0 TTTTTTTTTTTGCCACCATCAGTTCAGNGGGAGTAGAGGAGTCGTCCCTCATGCAGATGG 720 ******* **** ********** * ** ***** ***** ** *********** consensus_5726#1 TATTTTACTGT-AGTTATACGG-ATTTTAAGTTGCCAATTTTGCCCCTTTTTAATTCCCA 424 consensus_5726#2 TATCTTACTGT-AGTTATACTG-ATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCA 283 consensus_5726#0 TATCTTACCGGGAGNTATACTGGATTTTAAGNTGNCAATTTTGNCCCATCTTAACTACCA 780 *** **** * ** ***** * ******** ** ******** * * * **** * *** consensus_5726#1 TGCTGTAGATTATTATGAAGTTTGGCCCCCCCGGCAACTTCAATTTTGCTGTAATGCCAA 484 consensus_5726#2 TGCTGTAGACTACTATGAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAA 343 consensus_5726#0 TGCTGGAGACTAC----------------------------------------------- 793 ***** *** ** consensus_5726#1 GGGGAGCCCGGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTCCCTGTGACTTC 544 consensus_5726#2 GAGGAGCCCTGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTACCTGTGACTAC 403 consensus_5726#0 ------------------------------------------------------------ consensus_5726#1 TGCAAATGAATGGAACAGGGG---------------------- 565 consensus_5726#2 TGCAAATGAATGGAACAAGAAACGCACGTCTTCAAAAAGCGGC 446 consensus_5726#0 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||