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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 968 fasta sequence
[GTGGCGCGGCGGCGGCGGAGCTGAGCGGCCGCGGCGATGGCGCCAAGGGACCAGTCATGTGGGGACGGCGGCGAGGTGGATCCGGAGGGTGGCATCGAGGCGCCACTCCTCTCCTCCGGCTCCTCGTTCTTCCAGGACCCGGCGCACGAGGACGGCGATGGCGACGAGGAGGCGCGACGGCGGCGGCGGAGGTTCCTCCTCGCCGGCCGCTCCCAGTCCAACACCACCTCCCAGGTGGCCCTCGTCGGCGTCGGCGTGTGCCCCATCGAGAGCCTCGACTACGAGTTGATCGAGAACGAAGTGTTCAAGCAGGACTGGAGGGCGCGGGGGCGGGGTCACATCCTGCGCTACGTGGCGCTCAAGTGGGCCCTCTGCTTCCTCGTCGGCGTCCTCTCCGCCGCCGCCGGATTCGTCGCCAACCTCGGCGTCGAGAACGTCGCCGGCGCCAAGTTCGTCGTCACCTCCAATCTCATGCTCGCCGGCAGATACGGGACAGCGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGTTAGCAACGGTGCTGACGGTGTATGTGGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCGACATATTTTCTCTAAAGACCCTGGTGGTGAAGATTGTGGGTTGCATTGCTGCAGTATCATCATCATTGCATGTGGGAAAAGCTGGTCCTCTAGTACACACAGGTGCATGCATTGCATCTATACTTGGACAAGGTGGGTCAAGTAAATATCACCTGACATGTAAATGGCTAAGGTACTTCAAGAATGATAGGGACCGAAGGGACCTTGTTACTTGTGGTGCTGGTGCTGGTATTGCTGCTGCTTTCCGGGCACCAGTTGGTGGAGTCCTGTTTGCTCTTGAAGCAGTGTCTTCATGGTGGAGGAGTGCCCTACTCTGGCGAGCATTTTTCANCACAGC]
[+] EMBL CB629202 [GTGGCGCGGCGGCGGCGGAGCTGAGCGGCCGCGGCGATGGCGCCAAGGGACCAGTCATGTGGGGACGGCGGCGAGGTGGATCCGGAGGGTGGCATCGAGGCGCCACTCCTCTCCTCCGGCTCCTCGTTCTTCCAGGACCCGGCGCACGAGGACGGCGATGGCGACGAGGAGGCGCGACGGCGGCGGCGGAGGTTCCTCCTCGCCGGCCGCTCCCAGTCCAACACCACCTCCCAGGTGGCCCTCGTCGGCGTCGGCGTGTGCCCCATCGAGAGCCTCGACTACGAGTTGATCGAGAACGAAGTGTTCAAGCAGGACTGGAGGGCGCGGGGGCGGGGTCACATCCTGCGCTACGTGGCGCTCAAGTGGGCCCTCTGCTTCCTCGTCGGCGTCCTCTCCGCCGCCGCCGGATTCGTCGCCAACCTCGGCGTCGAGAACGTCGCCGGCGCCAAGTTCGTCGTCACCTCCAATCTCATGCTCGCCGGCAGATACGGGACAGCGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGTTAGCAACGGTGCTGACGGTGTATGTGGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCGACATATTTTCTCTAAAGACCCTGGTGGTGAAGATTGTGGGTTGCATTGCTGCAGTATCATCATCATTGCATGTGGGAAAAGCTGGTCCTCTAGTACACACAGGTGCATGCATTGCATCTATACTTGGACAAGGTGGGTCAAGTAAATATCACCTGACATGTAAATG ]
[+] EMBL CB670273 [ AACACCACCTCCCAGGTGGCCCTCGTCGGCGTCGGCGTGTGCCCCATCGAGAGCCTCGACTACGAGTTGATCGAGAACGAAGTGTTCAAGCAGGACTGGAGGGCGCGGGGGCGGGGTCACATCCTGCGCTACGTGGCGCTCAAGTGGGCCCTCTGCTTCCTCGTCGGCGTCCTCTCCGCCGCCGCCGGATTCGTCGCCAACCTCGGCGTCGAGAACGTCGCCGGCGCCAAGTTCGTCGTCACCTCCAATCTCATGCTCGCCGGCAGATACGGGACAGCGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGTTAGCAACGGTGCTGACGGTGTATGTGGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCGACATATTTTCTCTAAAGACCCTGGTGGTGAAGATTGTGGGTTGCATTGCTGCAGTATCATCATCATTGCATGTGGGAAAAGCTGGTCCTCTAGTACACACAGGTGCATGCATTGCATCTATACTTGGACAAGGTGGGTCAAGTAAATATCACCTGACATGTAAATGGCTAAGGTACTTCAAGAATGATAGGGACCGAAGGGACCTTGTTACTTGTGGTGCTGGTGCTGGTATTGCTGCTGCTTTCCGGGCACCAGTTGGTGGAGTCCTGTTTGCTCTTGAAGCAGTGTCTTCATGGTGGAGGAGTGCCCTACTCTGGCGAGCATTTTTCANCACAGC]
consensusID : consensus_5754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[TCTGTGTCCCCTCAAAATTGATTTGATCAGATACGGGACAGCGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGTTAGCAACGGTGCTGACGGTGTATGTGGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCGACATATTTTCTCTAAAGACCCTGGTGGTGAAGGTAGACTACTGTTATATCTCTTTCATTCAAGTTATTTCATCACAGAGTACTGGTAATTCTTGACACTTATTAGTTGTCCCTGTGATTTTTTTTTCCAAGAAGAAGTTGTCTCTGTGATTGATTTGTGGCAAACATATATCTAGTCTTTTGTTCCATTCTGTTTTTGTTCAACATCATTGGAGACGATTTAAATAAGTTGAAAATGTTGGTCTGTTAGACATGATCAGGTTTGTATGGGCTAAGAAATCATGTATATATAACTACGAATAATATGCATGGAAGAGTTAGGAAATACACATTGTTTGGTCTCTGGCAGGACATCAGTGTCTGTGTCTGTGGTACAACTTGTTTGTTATTCATTTTGGAGCAGCTCTATTGACTGTTGGACATGTATATATAGTTTGCGATGTAACTCTATGTTCACTTCAAAAGCAGAATTTAGAACCTGGCAATTAGTATTGAGTTCTGTGTCATCTGGAGATTTTCCCCGTTCCTTCTCTCTTGACCAATTGTCATCTCGGTGAAGCATGACTCTTTGTTTGCTTTCTTTAGTTTTCCATCTCAGACAAATGCAGGGCAATCTTTTTCATTTTA]
[+] EMBL CB673646 [TCTGTGTCCCCTCAAAATTGATTTGATCAGATACGGGACAGCGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGTTAGCAACGGTGCTGACGGTGTATGTGGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCGACATATTTTCTCTAAAGACCCTGGTGGTGAAGGTAGACTACTGTTATATCTCTTTCATTCAAGTTATTTCATCACAGAGTACTGGTAATTCTTGACACTTATTAGTTGTCCCTGTGATTTTTTTTTCCAAGAAGAAGTTGTCTCTGTGATTGATTTGTGGCAAACATATATCTAGTCTTTTGTTCCATTCTGTTTTTGTTCAACATCATTGGAGACGATTTAAATAAGTTGAAAATGTTGGTCTGTTAGACATGATCAGGTTTGTATGGGCTAAGAAATCATGTATATATAACTACGAATAATATGCATGGAAGAGTTAGGAAATACACATTGTTTGGTCTCTGGCAGGACATCAGTGTCTGTGTCTGTGGTACAACTTGTTTGTTATTCATTTTGGAGCAGCTCTATTGACTGTTGGACATGTATATATAGTTTGCGATGTAACTCTATGTTCACTTCAAAAGCAGAATTTAGAACCTGGCAATTAGTATTGAGTTCTGTGTCATCTGGAGATTTTCCCCGTTCCTTCTCTCTTGACCAATTGTCATCTCGGTGAAGCATGACTCTTTGTTTGCTTTCTTTAGTTTTCCATCTCAGACAAATGCAGGGCAATCTTTTTCATTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5754#0 GTGGCGCGGCGGCGGCGGAGCTGAGCGGCCGCGGCGATGGCGCCAAGGGACCAGTCATGT 60
consensus_5754#1 ------------------------------------------------------------
consensus_5754#0 GGGGACGGCGGCGAGGTGGATCCGGAGGGTGGCATCGAGGCGCCACTCCTCTCCTCCGGC 120
consensus_5754#1 ------------------------------------------------------------
consensus_5754#0 TCCTCGTTCTTCCAGGACCCGGCGCACGAGGACGGCGATGGCGACGAGGAGGCGCGACGG 180
consensus_5754#1 ----------TCTGTGTCCC--CTCAAAATTGATTTGATCA-GATACGGGACAGCGTTTG 47
** * *** * ** * *** ** ** *** *
consensus_5754#0 CGGCGGCGGAGGTTCCTCCTCGCCGGCCGCTCCCAGTCCAACACCACCTCCCAGGTGGCC 240
consensus_5754#1 CGGTGTTCCTGGTTTCGAATTTC--GCCCTTACGATGTTAGCA--ACGGTGCTGACGGTG 103
*** * **** * * * *** * * * * ** ** * * **
consensus_5754#0 CTCGTCGGCGTCGGCGTGTGCCCCATCGAGAGCCTCGACTACGAGTTGATCGAGAACGAA 300
consensus_5754#1 TATGT-GGCGCCGGCGGCGGCCGGGTCGGGCATCCC-----TGAGGTGAA-------GGC 150
** **** ***** *** *** * * * *** *** *
consensus_5754#0 GTGTTCAAGCAGGACTGGAGGGCGCGGGGGCGGGGTCACATCCTGCGCTACGTGGCGCTC 360
consensus_5754#1 TTACTTGAACGGGGTTGATGCCCCC---GACATATTTTC--TCTAAAGACCCTGGTGGTG 205
* * * * ** ** * * * * * * * ** * *** * *
consensus_5754#0 AAGTGGGCCCTCTGCTTCCTCGTCGGCGTCCTCTCCGCCGCCGC-CGGATTCGTCGCCAA 419
consensus_5754#1 AAGGTAGACTACTGTTATATCTCTTTCATTCAAGTTATTTCATCACAGAGTACTGGTAAT 265
*** * * *** * ** * * * * * * ** * * * *
consensus_5754#0 CCTCGGCGTCGAGAACGTCGCCGGCGCCAAGTTCGTCGTCACCTCCAATCTCATGCTCGC 479
consensus_5754#1 TCTTGACACTTATTA-GTTGTCCCTGTGATTTTTTTTTCCAAGAAGAAGTTGT--CTCTG 322
** * * * * ** * * * * ** * ** ** * ***
consensus_5754#0 CGGCAGATACGGGACAG-CGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGT 538
consensus_5754#1 TGATTGATTTGTGGCAAACATATATCTAGTCTTTTGTTCC--ATTCTGTTTTTGT----T 376
* *** * * ** * * * ** * *** * *** * ** *
consensus_5754#0 TAGCAACGGTGCTGACGGTGTATGTGG--CGCCGGCGGCGGCCGGGTCGGGCATCCCTGA 596
consensus_5754#1 CAACATCATTGGAGACGATTTAAATAAGTTGAAAATGTTGGTCTG-TTAGACATGATCAG 435
* ** * ** **** * ** * * * ** * * * * ***
consensus_5754#0 G---GTGAAGGCTTACTTGAACGGGGTTGATGCCCCCGACATATTTTCTCTAAAGACCCT 653
consensus_5754#1 GTTTGTATGGGCTAAGAAATCATGTATATATAACTACGAATAATATGCATGGAAGAGTTA 495
* ** **** * * * ** * *** ** * * ****
consensus_5754#0 GGTGGTGAAGATTGTGGGTTGCATTGCTGCAGTATCATCATCATTGCATGTGGGAAAAGC 713
consensus_5754#1 GGAAATACACATTGTTTGGT-CTCTGGCAGGACATCAGTGTCTGTGTCTGTGGTACAACT 554
** * * ***** * * * ** **** ** ** ***** * **
consensus_5754#0 TGGTCCTCTAGTACACACAGGTGCATGCATTGCATCTATACTTGGACAAG-GTGGGTCAA 772
consensus_5754#1 TG--TTTGTTATTCATTTTGGAGCA---GCTCTATTGACTGTTGGACATGTATATATAGT 609
** * * * ** ** *** * ** * ******* * * *
consensus_5754#0 GTA-AATATCACCTGACATGTAAATGGCTAAGGTACTTCAAGAA-TGATAGGGACCGAAG 830
consensus_5754#1 TTGCGATGTAACTCTATGTTCACTTCAAAAGCAGAATTTAGAACCTGGCAATTAGT-ATT 668
* ** * ** * * * * * * ** * * ** * * *
consensus_5754#0 GGACCTTGTTACTTGTGGTGCTGGTGCTGGTATTGCTGCTGCTTTCCGGGCACCAGTTGG 890
consensus_5754#1 GAGTTCTGTGTCATCTGGAGATTTTCCCCGTTCCTTCTCTCTTGACCAATTGTCATCTCG 728
* *** * * *** * * * * ** ** * ** ** * *
consensus_5754#0 TGGAGTCCTGTTTGCTCTTGAAGCAGTGTCTTCA-TGGTGGAGGAGTGCCCTACTCTGGC 949
consensus_5754#1 GTGAAGCATG---ACTCTTTGTTTGCTTTCTTTAGTTTTCCATCTCAGACAAATGCAGGG 785
** * ** ***** * **** * * * * * * * * **
consensus_5754#0 GAGCATTTTTCANCACAGC 968
consensus_5754#1 CAATCTTTTTCATTTTA-- 802
* ******* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||