These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCCGTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTCCTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAACACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAATTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTCACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGGCGTGTAAACCGGCGCGAACCAAAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGAGGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTCCCGCGTAGACGCCGCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCACGTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCGCCGCCGGAAGCGGCCACGGGCCGGAGCAGCTCCACCTGC] [+] EMBL CB645449 [CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCCGTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTCCTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAACACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAATTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTCACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGGCGTGTAAACCGGCGCGAACCAAAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGAGGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTCCCGCGTAGACGCCGCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCACGTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCGCCGCCGGAAGCGGCCACGGGCCGGAGCAGCT ] [+] EMBL C98002 [ nCCTGATAATGTACCACTCCATTATGATCCACAAGAGAT AAAATAGTCAAGGTTGATGAACACTAGACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAGAAGACGGACAATTCTCTGAGTTCTTCTGGCTTAGATCCAACTCGCAATACGTCNATCCAAAGGCAATGGTCACCATCAAACTCGAGCCGCCGCGGTGGNACGGTCACGGNGTGTAGACCGGCGCGAACCAGAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTA GCGCACACGCGCGTCTCGCCGGCGAGGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGNANTCCCGCGTAGACGCCGCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCACGTCTCGCCGCATTCGTCCAGCACGCGCACCACGAACCCCTCCTCCTCGTCCTCGCCGCCGCCGGACGCGGCCACGGGCCGGAGCAGCTCCACCTGC] consensusID : consensus_5799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CAAAAGGAACACACCAACGCAAAGGCCATTTGGGGGAAGAGGTTATCCAAAAACCCGTTGAATTTAAGAAGGGGTTATTTTTCAATAAACCATCTTATATAGGGAATCATAAAACTTAAGAGAAATTTGCATATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAATGGGATTCGACCAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCTTTTTCTATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCCCCTAAGTCAACTGCTGAATCGTACGTTGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCCTCATGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGACGAGGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGACGCCGCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTCACCCACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTCGACCACGACCACGGGCTGGAGCAGCTCCAACTGC] [+] EMBL BI807573 [CAAAAGGAACACACCAACGCAAAGGCCATTTGGGGGAAGAGGTTATCCAAAAACCCGTTGAATTTAAGAAGGGGTTATTTTTCAATAAACCATCTTATATAGGGAATCATAAAACTTAAGAGAAATTTGCATATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAATGGGATTCGACCAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCTTTTTCTATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCCCCTAAGTCAACTGCTGAATCGTACGTTGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCCTCATGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGACGAGGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGACGCCGCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTCACCCACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTCGACCACGACCACGGGCTGGAGCAGCTCCAACTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5799#0 CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCC 60 consensus_5799#1 ----------------------------CAAAAGGAACACACCAACGCAAAGGCCATTTG 32 ** ** * *** * * * * * consensus_5799#0 GTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTC 120 consensus_5799#1 GGGGAAGAGGTTATCCAAAAACCCGTTGAATTTA--------AGAAGGGGTTAT---TTT 81 * ** ** * * ** * * **** **** * * ** consensus_5799#0 CTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAAC 180 consensus_5799#1 TCAATAA---ACCATCTTAT--------ATAGGGAATCATAAAACTTAAGAGAAATTTGC 130 **** **** ** * * * ** * ** *** *** * ** * consensus_5799#0 ACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAA 240 consensus_5799#1 A-TATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAATGGGATTCGA 189 * ** * ** * * * * ** ***** ***** * **** * * * consensus_5799#0 TTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTC 300 consensus_5799#1 C---CAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCTTTTTCT 246 * * * * ** * **** * *** * * * consensus_5799#0 ACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGG-CGTGTAAACCGGCGCGAACCA 359 consensus_5799#1 ATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCC--CCTAAGTCA 304 * *** * * * ** *** *** ** ** * * ** consensus_5799#0 AAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGAC-CTCGATCCTCT 418 consensus_5799#1 ACTGCTGAATCGTACGT-TGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCCTCA 363 * ** * * ** ** * ** *** * * ********** consensus_5799#0 TGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGA 478 consensus_5799#1 TGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGACGA 423 ************* **** * *********** **** *********** **** *** consensus_5799#0 GGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTC-CCGCGTAGACGCC 537 consensus_5799#1 GGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGACGCC 483 *** ******************** ** * ****** **** ** ****** ****** consensus_5799#0 GCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCC 597 consensus_5799#1 GCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTCACC 543 ******* *** **** ********************* ******* ******** * ** consensus_5799#0 CACGTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCG 657 consensus_5799#1 CACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTC------------- 590 ************** ******************* ************ consensus_5799#0 CCGCCGGAAGCGGCCACGGGCCGGAGCAGCTCCACCTGC 696 consensus_5799#1 -----GACCACGACCACGGGCTGGAGCAGCTCCAACTGC 624 * ** ******** ************ **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||