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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1582 fasta sequence
[TAAAAATCAGAAAAAAAAACTTTAATTTCCAGTCTTGCTCTGCGCCGCCGCCGGCGACCACCGCAGCAACCTCCGCCGCCGCCGCCGCCGTCCAGGAACTGACCGGCCGAGCTGCTCCGTCTCGTGGGGCGCGCGTGGCGGCGATGGCGAGGCACGAGGCGGCGGCCGGGGTGGTGGACTTCCACCTGCCCGACGAGATCCTGGCTGTGATCCCCACCGACCCGTACGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATGGCCATCGCCTCCCGCGTCTCCCGCCTCGAGGCCGACGCGGCGCGCCTCCGCCGCGACCTCGCCGACCGGGACCGCGCCGAGGCCGACCTCCGCGCCCGCCTCGCGGACTCCGACGCCCGCCTCCTCGCCGCCCTCGACGAGAACGCGAAGCTGGCGAAGGAGAGGGACTCGCTCGCCTCCACGGCCAAGAAGATGGCGAGGAACTTGGCGAAGTTGGAAGCATTTAAGAAGCAGTTGATGAAGTCACTGAGTGAAGACAATTTATTACAATTGTCAGAAATAGGTGATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTTGGGAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGACTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTCCTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAGTCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACCCACCTCCCCTCCTCAGCATCGTTCGTTCGCAGGGCGGCCCCGTATAGACGGAAAGGAATTTTTCCGGCAAGCACGGACACGACTTTCGTATGAGCAATTTGGGGCATTTTTAGCTAACATCAAGGAGTTCAATGCTCAGAAACAATCACGAGAGGACACTCTCTCAAAGGCAGAAGAGATTTTTGGAACAGAACATAAAGGTTTGTACATTTCTTTCCAGAATATGCTTAACCGCAACCATTCTTGAATGCTTGTCACAGGCTTCAGTCTATTTTTGTCTCTTAAACAAGCAGGAAGTATGTAACTGTTGGAAGATAATCGTTGTTCCTTCATAGACGTAAACAACAAATTGCCAGAGATTTGTAAATAGATCATTATAATTTAAGCTGGCCATCCTCAATATCACTATGTAAATGGACCCAGTCATGCATCCCAAAACAGGGATCTGGGAACTGAAATATTACACCTATGGCAAATTTTGGTCTGTGTAATTAAGCATACATTCACATTCCATTGTAGCACTTCCTGTGTTCCTGCGGATTTCTTGAGGTGTCCTCCATGCAGAAAGTTGTACAATACTCAAAAACTGCTCTTTTGTATCTGTGTTAACAAGTACTAAACTGCTCTTTTTTGACACGGTGTATTGCCTTAATCCGTGTCAAAAAAACATGTATTGCCTTAAAAGAGTTCAGGCAATGATAGTATGTATTGCTTGTTCTCCTTGTCTGATGAACAAAGTAATTGCTA]
[+] EMBL AK106295 [TAAAAATCAGAAAAAAAAACTTTAATTTCCAGTCTTGCTCTGCGCCGCCGCCGGCGACCACCGCAGCAACCTCCGCCGCCGCCGCCGCCGTCCAGGAACTGACCGGCCGAGCTGCTCCGTCTCGTGGGGCGCGCGTGGCGGCGATGGCGAGGCACGAGGCGGCGGCCGGGGTGGTGGACTTCCACCTGCCCGACGAGATCCTGGCTGTGATCCCCACCGACCCGTACGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATGGCCATCGCCTCCCGCGTCTCCCGCCTCGAGGCCGACGCGGCGCGCCTCCGCCGCGACCTCGCCGACCGGGACCGCGCCGAGGCCGACCTCCGCGCCCGCCTCGCGGACTCCGACGCCCGCCTCCTCGCCGCCCTCGACGAGAACGCGAAGCTGGCGAAGGAGAGGGACTCGCTCGCCTCCACGGCCAAGAAGATGGCGAGGAACTTGGCGAAGTTGGAAGCATTTAAGAAGCAGTTGATGAAGTCACTGAGTGAAGACAATTTATTACAATTGTCAGAAATAGGTGATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTTGGGAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGACTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTCCTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAGTCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACCCACCTCCCCTCCTCAGCATCGTTCGTTCGCAGGGCGGCCCCGTATAGACGGAAAGGAATTTTTCCGGCAAGCACGGACACGACTTTCGTATGAGCAATTTGGGGCATTTTTAGCTAACATCAAGGAGTTCAATGCTCAGAAACAATCACGAGAGGACACTCTCTCAAAGGCAGAAGAGATTTTTGGAACAGAACATAAAGGTTTGTACATTTCTTTCCAGAATATGCTTAACCGCAACCATTCTTGAATGCTTGTCACAGGCTTCAGTCTATTTTTGTCTCTTAAACAAGCAGGAAGTATGTAACTGTTGGAAGATAATCGTTGTTCCTTCATAGACGTAAACAACAAATTGCCAGAGATTTGTAAATAGATCATTATAATTTAAGCTGGCCATCCTCAATATCACTATGTAAATGGACCCAGTCATGCATCCCAAAACAGGGATCTGGGAACTGAAATATTACACCTATGGCAAATTTTGGTCTGTGTAATTAAGCATACATTCACATTCCATTGTAGCACTTCCTGTGTTCCTGCGGATTTCTTGAGGTGTCCTCCATGCAGAAAGTTGTACAATACTCAAAAACTGCTCTTTTGTATCTGTGTTAACAAGTACTAAACTGCTCTTTTTTGACACGGTGTATTGCCTTAATCCGTGTCAAAAAAACATGTATTGCCTTAAAAGAGTTCAGGCAATGATAGTATGTATTGCTTGTTCTCCTTGTCTGATGAACAAAGTAATTGCTA]
[+] EMBL CB657386 [ ATTTCCAGTCTTGCTCTGCGCCGCCGCCGGCGACCACCGCAGCAACCTCCGCCGCCGCCGCCGCCGTCCAGGAACTGACCGGCCGAGCTGCTCCGTCTCGTGGGGCGCGCGTGGCGGCGATGGCGAGGCACGAGGCGGCGGCCGGGGTGGTGGACTTCCACCTGCCCGACGAGATCCTGGCTGTGATCCCCACCGACCCGTACGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATGGCCATCGCCTCCCGCGTCTCCCGCCTCGAGGCCGACGCGGCGCGCCTCCGCCGCGACCTCGCCGACCGGGACCGCGCCGAGGCCGACCTCCGCGCCCGCCTCGCGGACTCCGACGCCCGCCTCCTCGCCGCCCTCGACGAGAACGCGAAGCTGGCGAAGGAGAGGGACTCGCTCGCCTCCACGGCCAAGAAGATGGCGAGGAACTTGGCGAAGTTGGAAGCATTTAAGAAGCAGTTGATGAAGTCACTGAGTGAAGACAATTTATTACAATTGTCAGAAATAGGTGATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTTGGAAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGACTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTCCTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAGTCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACC ]
consensusID : consensus_5800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence
[GATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTNGGAAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGACTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTCCTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAGTCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACCCACCTCCCCTCCTCAGCATCGTTCGTTCGCAGGGCGGCCCCGTATAGACGGAAAGGAATTTTTCCGGCAAGCACGGACACGACTTTCGTATGAGCAATTTGGGGCATTTTTAGCTAACATCAAGGAGTTCAATGCTCAGAAACAATCACGAGAGGACACTCTCTCAAAGGCAGAAGAGATTTTTGGAACAGAACATAAAGATTTGTACATTTCTTTCCAGAATATGCTTAACCGCAACCATTCTTGAATGCTTGTCACAGGCTTCAGTCTATTTTTGTCTCTTAAACAAGCAGGAAGTATGTAACTGTTGGAAGATAATCGTTGTTCTTTCATAGACGTAAACAACAAATTGCCAGAGATTTGTAAATAGATCATTATAATTTAAGCTGGCCATCCTCAATATCACTATGTAAATGGACCCAGTCATGCATCCCAAAACAGGGATCTGGGAACTGAAATATTACACCTATGGCAAATTTTGGTCTGTGTAATTAAGCATACATGCACATTCCATGTAAAAAAAAAAGA]
[-] EMBL CB657387 [GATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTNGGAAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGACTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTCCTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAGTCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACCCACCTCCCCTCCTCAGCATCGTTCGTTCGCAGGGCGGCCCCGTATAGACGGAAAGGAATTTTTCCGGCAAGCACGGACACGACTTTCGTATGAGCAATTTGGGGCATTTTTAGCTAACATCAAGGAGTTCAATGCTCAGAAACAATCACGAGAGGACACTCTCTCAAAGGCAGAAGAGATTTTTGGAACAGAACATAAAGATTTGTACATTTCTTTCCAGAATATGCTTAACCGCAACCATTCTTGAATGCTTGTCACAGGCTTCAGTCTATTTTTGTCTCTTAAACAAGCAGGAAGTATGTAACTGTTGGAAGATAATCGTTGTTCTTTCATAGACGTAAACAACAAATTGCCAGAGATTTGTAAATAGATCATTATAATTTAAGCTGGCCATCCTCAATATCACTATGTAAATGGACCCAGTCATGCATCCCAAAACAGGGATCTGGGAACTGAAATATTACACCTATGGCAAATTTTGGTCTGTGTAATTAAGCATACATGCACATTCCATGTAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5800#0 TAAAAATCAGAAAAAAAAACTTTAATTTCCAGTCTTGCTCTGCGCCGCCGCCGGCGACCA 60
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CCGCAGCAACCTCCGCCGCCGCCGCCGCCGTCCAGGAACTGACCGGCCGAGCTGCTCCGT 120
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CTCGTGGGGCGCGCGTGGCGGCGATGGCGAGGCACGAGGCGGCGGCCGGGGTGGTGGACT 180
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TCCACCTGCCCGACGAGATCCTGGCTGTGATCCCCACCGACCCGTACGAGCAGCTGGACG 240
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TGGCGCGGAAGATCACCTCCATGGCCATCGCCTCCCGCGTCTCCCGCCTCGAGGCCGACG 300
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CGGCGCGCCTCCGCCGCGACCTCGCCGACCGGGACCGCGCCGAGGCCGACCTCCGCGCCC 360
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 GCCTCGCGGACTCCGACGCCCGCCTCCTCGCCGCCCTCGACGAGAACGCGAAGCTGGCGA 420
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 AGGAGAGGGACTCGCTCGCCTCCACGGCCAAGAAGATGGCGAGGAACTTGGCGAAGTTGG 480
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 AAGCATTTAAGAAGCAGTTGATGAAGTCACTGAGTGAAGACAATTTATTACAATTGTCAG 540
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 AAATAGGTGATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTT 600
consensus_5800#1 --------GATGACCGTGATTTTGATGCAAACAACAATTTGACTGCTCGAGTTCCCTCTN 52
***************************************************
consensus_5800#0 GGGAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGA 660
consensus_5800#1 GGAAAGATGAAGTTTCAAGTAGTCGCACTTCTGCAGATAGTTCCAGCAGATCCACAATGA 112
** *********************************************************
consensus_5800#0 CTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTC 720
consensus_5800#1 CTGAATCAGCCCAAGAACATCAGTTCTCAGTCACACCATACACAGCTCCTAAATTAACTC 172
************************************************************
consensus_5800#0 CTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAG 780
consensus_5800#1 CTGGTTCAACACCTAAGTTCTTATCTGGTCCAACATCACCTACAAAATCTCTGTCAGAAG 232
************************************************************
consensus_5800#0 TCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACCCACCT 840
consensus_5800#1 TCCACTCAACATTTTCATCATGGCATGGATCGTCAAGCCATCAGTATTCAGCACCCACCT 292
************************************************************
consensus_5800#0 CCCCTCCTCAGCATCGTTCGTTCGCAGGGCGGCCCCGTATAGACGGAAAGGAATTTTTCC 900
consensus_5800#1 CCCCTCCTCAGCATCGTTCGTTCGCAGGGCGGCCCCGTATAGACGGAAAGGAATTTTTCC 352
************************************************************
consensus_5800#0 GGCAAGCACGGACACGACTTTCGTATGAGCAATTTGGGGCATTTTTAGCTAACATCAAGG 960
consensus_5800#1 GGCAAGCACGGACACGACTTTCGTATGAGCAATTTGGGGCATTTTTAGCTAACATCAAGG 412
************************************************************
consensus_5800#0 AGTTCAATGCTCAGAAACAATCACGAGAGGACACTCTCTCAAAGGCAGAAGAGATTTTTG 1020
consensus_5800#1 AGTTCAATGCTCAGAAACAATCACGAGAGGACACTCTCTCAAAGGCAGAAGAGATTTTTG 472
************************************************************
consensus_5800#0 GAACAGAACATAAAGGTTTGTACATTTCTTTCCAGAATATGCTTAACCGCAACCATTCTT 1080
consensus_5800#1 GAACAGAACATAAAGATTTGTACATTTCTTTCCAGAATATGCTTAACCGCAACCATTCTT 532
*************** ********************************************
consensus_5800#0 GAATGCTTGTCACAGGCTTCAGTCTATTTTTGTCTCTTAAACAAGCAGGAAGTATGTAAC 1140
consensus_5800#1 GAATGCTTGTCACAGGCTTCAGTCTATTTTTGTCTCTTAAACAAGCAGGAAGTATGTAAC 592
************************************************************
consensus_5800#0 TGTTGGAAGATAATCGTTGTTCCTTCATAGACGTAAACAACAAATTGCCAGAGATTTGTA 1200
consensus_5800#1 TGTTGGAAGATAATCGTTGTTCTTTCATAGACGTAAACAACAAATTGCCAGAGATTTGTA 652
********************** *************************************
consensus_5800#0 AATAGATCATTATAATTTAAGCTGGCCATCCTCAATATCACTATGTAAATGGACCCAGTC 1260
consensus_5800#1 AATAGATCATTATAATTTAAGCTGGCCATCCTCAATATCACTATGTAAATGGACCCAGTC 712
************************************************************
consensus_5800#0 ATGCATCCCAAAACAGGGATCTGGGAACTGAAATATTACACCTATGGCAAATTTTGGTCT 1320
consensus_5800#1 ATGCATCCCAAAACAGGGATCTGGGAACTGAAATATTACACCTATGGCAAATTTTGGTCT 772
************************************************************
consensus_5800#0 GTGTAATTAAGCATACATTCACATTCCATTGTAGCACTTCCTGTGTTCCTGCGGATTTCT 1380
consensus_5800#1 GTGTAATTAAGCATACATGCACATTCCAT-GTAAAAAAAAAAGA---------------- 815
****************** ********** *** * *
consensus_5800#0 TGAGGTGTCCTCCATGCAGAAAGTTGTACAATACTCAAAAACTGCTCTTTTGTATCTGTG 1440
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TTAACAAGTACTAAACTGCTCTTTTTTGACACGGTGTATTGCCTTAATCCGTGTCAAAAA 1500
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 AACATGTATTGCCTTAAAAGAGTTCAGGCAATGATAGTATGTATTGCTTGTTCTCCTTGT 1560
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CTGATGAACAAAGTAATTGCTA 1582
consensus_5800#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||