These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence [CTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAGGTACAATTTGCAACTGGAAGGGATCTTACACCTGATCAGCTGAACAATATGATAGATACATTATCTGACTGGCTGGGAACATCGGATAATTTATTGCATCAGATTCAGGAGAAAATTAAGTGGGCTGATACAATGAGTGAAGTGAACAAGAAGCACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGTTGAACAATTTAAGCAGGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAGGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCTGAGGAAACTTCCCCACATCAATTTATTTATGGTGCTTCCTTTTGAAGCGAGTATCCGTTATCATTGTCTCTTCTGGAGAAAATATTCGTTTTGGTACGAGATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTAAAAAAAAATACAGGTGGCTGGCTTAGCGTTGTAAAGATCATGGTTCTGAAAGTATTTTTTGGTGACTTAAAGTTCGCTCTGTTTGCATTTTGGCTGTGTTTGTAGCTGTGATTCATCAGCCACGCTCATCAAGTTGAAACTTGAAAGCTATCAACTTACGAAATTATTTTATAGGAATTAGTTCATATCCTACGGTCATCTGGAAGAACTGCCGTATTGTAAAGGAGCCCTAAATTGTTTTGGGTCGTACTTAGCAAATGAT] [+] EMBL AK058214 [CTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAGGTACAATTTGCAACTGGAAGGGATCTTACACCTGATCAGCTGAACAATATGATAGATACATTATCTGACTGGCTGGGAACATCGGATAATTTATTGCATCAGATTCAGGAGAAAATTAAGTGGGCTGATACAATGAGTGAAGTGAACAAGAAGCACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGTTGAACAATTTAAGCAGGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAGGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCTGAGGAAACTTCCCCACATCAATTTATTTATGGTGCTTCCTTTTGAAGCGAGTATCCGTTATCATTGTCTCTTCTGGAGAAAATATTCGTTTTGGTACGAGATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTAAAAAAAAATACAGGTGGCTGGCTTAGCGTTGTAAAGATCATGGTTCTGAAAGTATTTT ] [-] EMBL AU225583 [ ccgctTACAGGTGGCTGGCTTAGCGTTGTAAAGATCATGGTTCTGAAAGTATTTTTTGGTGACTTAAAGTTCGCTCTGTTTGCATTTTGGCTGTGTTTGTAGCTGTGATTCATCAGCCACGCTCATCAAGTTGAAACTTGAAAGCTATCAACTTACGAAATTATTTTATAGGAATTAGTTCATATCCTACGGTCATCTGGAAGAACTGCCGTATTGTAAAGGAGCCCTAAATTGTTTTGGGTCGTACTTAGCAAATGAT] consensusID : consensus_5801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [CTTGAGACANTTTGGCACCAGANCTGAGGAAACTTCCCCANTTCAATTTANTTATGGTGCTTCCTTTTGAANCGAGTATCCGTTANCATTGTCNCTTCTGGAGAAAATANTCGTTTTGGTACGANATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTTAAAAAAAATACAGGTGGCTGGCTTANCGTTGTAAAGATCATGGNTCTGAAAGTATTTTTTGGTGACTTAAAGTTCAAAAAAAAAAAAAA] [+] EMBL AU181123 [CTTGAGACANTTTGGCACCAGANCTGAGGAAACTTCCCCANTTCAATTTANTTATGGTGCTTCCTTTTGAANCGAGTATCCGTTANCATTGTCNCTTCTGGAGAAAATANTCGTTTTGGTACGANATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTTAAAAAAAATACAGGTGGCTGGCTTANCGTTGTAAAGATCATGGNTCTGAAAGTATTTTTTGGTGACTTAAAGTTCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5801#0 CTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGGGTATTGTCAGGGGCAAATTGGAT 60 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 CAGCTGCGGAGGTGTTTTGAGGTACAATTTGCAACTGGAAGGGATCTTACACCTGATCAG 120 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 CTGAACAATATGATAGATACATTATCTGACTGGCTGGGAACATCGGATAATTTATTGCAT 180 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 CAGATTCAGGAGAAAATTAAGTGGGCTGATACAATGAGTGAAGTGAACAAGAAGCACCAG 240 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 AAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGTTGAACAATTTAAGC 300 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 AGGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGG 360 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 ATTTTGAAGAGGACCGCATCCGACCAAAAAGGAGGCGACAACCAATGGCATAGTTTCAAT 420 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 GGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTG 480 consensus_5801#1 ----------------------------------------------CTTGAGACANTTTG 14 ********* **** consensus_5801#0 GCACCAGAGCTGAGGAAACTTCCCCACATCAATTTATTTATGGTGCTTCCTTTTGAAGCG 540 consensus_5801#1 GCACCAGANCTGAGGAAACTTCCCCANTTCAATTTANTTATGGTGCTTCCTTTTGAANCG 74 ******** ***************** ******** ******************** ** consensus_5801#0 AGTATCCGTTATCATTGTCTCTTCTGGAGAAAATATTCGTTTTGGTACGAGATGTACAAG 600 consensus_5801#1 AGTATCCGTTANCATTGTCNCTTCTGGAGAAAATANTCGTTTTGGTACGANATGTACAAG 134 *********** ******* *************** ************** ********* consensus_5801#0 GTTGACACTTACCGTAGCATTTGTTTGCTGGTAAAAAAAAATACAGGTGGCTGGCTTAGC 660 consensus_5801#1 GTTGACACTTACCGTAGCATTTGTTTGCTGGTTAAAAAAAATACAGGTGGCTGGCTTANC 194 ******************************** ************************* * consensus_5801#0 GTTGTAAAGATCATGGTTCTGAAAGTATTTTTTGGTGACTTAAAGTTCGCTCTGTTTGCA 720 consensus_5801#1 GTTGTAAAGATCATGGNTCTGAAAGTATTTTTTGGTGACTTAAAGTTCAAAAAAAAAAAA 254 **************** ******************************* * consensus_5801#0 TTTTGGCTGTGTTTGTAGCTGTGATTCATCAGCCACGCTCATCAAGTTGAAACTTGAAAG 780 consensus_5801#1 AA---------------------------------------------------------- 256 consensus_5801#0 CTATCAACTTACGAAATTATTTTATAGGAATTAGTTCATATCCTACGGTCATCTGGAAGA 840 consensus_5801#1 ------------------------------------------------------------ consensus_5801#0 ACTGCCGTATTGTAAAGGAGCCCTAAATTGTTTTGGGTCGTACTTAGCAAATGAT 895 consensus_5801#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||