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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1694 fasta sequence
[GCTCCGCCGCCATTTTAGGGATCCCTCGGCGCGTGGCCTCCGGTGCGGTGATGCCGCCGCATGAGGACGCCCTCGATGCCGGCGCCGTTGACGTGCTCACCTTCAGGCTCCACCCCCTCGCTGTCTTGAAATTATCCCACCGCATCCGCGAGTTCGTCCATCTCCACGATGACCAATACCAGCAAGCGAGGATGTCTGGGTGCGTTATTGGGGTTCGGCGTGGTGGGACGGTGGATATCTCCGATACCTTCGACATCTTGCACGACCCCGACCCCGGAACCTTCGACCGCGCCTTACTGGAGAAGGATCAGGAGATCTACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACACGGGAATCCACCATGGGGACTACACCGACATGCAAATCCACCAGACCTTGATGGATGCTAATGGAACAGCCTTTTATCTTCTATTAAATCCTGCAATCAACTTTTCCCATAAGGATATTCCTGTGACTATTTATGAAAGAGTGTTGTGCAATTCCGATGGGAGTCCCCCGGTCAGCTTTGTCCAAGGAAACTATACAGTTGAGATTGTAGGAGCAGAGAGGATATCTTTAGACCATGCTGATTTTCTCTATCCAAGTCCATGCGTAGTCTTCGATGTTCTTGCACCACCTCTTGGAGAAAAAAAAAATGCATTTAGGACGATGTTGTTTGAAACCCCTTCGGGATTTGCAATGTTCCGTGTTTCGGATGTTTTATTTAGATATCCGGAGGACATATGGTCGAGTTTTACTGATCCACATACTGCACACCAGGTCGTTCGTACCATTGGTTTTATTGAGGTTGGTGACAAATCTGTTGTATGGGATAATGATATTGGTCCTGGCGAGGATATAGAGCACTTTATCCTAAAATTTCCAATTAAATCATTGGTTGTTCCAGATGCACAGCTTAAATTTATTATTGAGAAAAACCTTAACATTAGCTGTTGGTTTAATGGGCGTATTGTTCCTGGGTTGATTTGGGGACTAAATTATGCCCTGGATGAATTTGTGCCTCGAGAGAAGGGCAACCTATCAAATGAACGCCATTTTCCACTGAGCAAGCAACTGCATGAGCAGTTAAAAGCATATGGATTTAGTATCTCACCACAATTGATTAACAGAGAGTTTATAACCAGTTTTGGTTACTTAAATTATCTGGAACGTACTTCAAATTGCATTTCCGGAGATTTACACCAGAAATTTGATCGTTTCTTTTGTGGACTTGAGATGTCTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTTCTTTTGGCGGTTCCTAAGAAGAAGTGTAACACGATATCTCGTCTTAAGCGTATGGAGGCAGAGGATAGGGGTACAGGGCTTGGGCATCCTTGGGTTTGCGCTGCTGCTGTTGCGGTGGGCTTCGGGGTTATGGCAGGATTGTGCATTGCGATGAAGCGAGCAAATTAGAACTGGGTAATAGGACCAATGAGACTAAATTAGGATCCGTATGTACGGTGACAAACAACCTTTGTGATCTAAAGTGACCAGTAAACAACCGCCAGTTCATCCTATCACGTGGCACAGTAATTTCTTAAATAAATCTCAAAAAAA]
[+] EMBL AK106674 [GCTCCGCCGCCATTTTAGGGATCCCTCGGCGCGTGGCCTCCGGTGCGGTGATGCCGCCGCATGAGGACGCCCTCGATGCCGGCGCCGTTGACGTGCTCACCTTCAGGCTCCACCCCCTCGCTGTCTTGAAATTATCCCACCGCATCCGCGAGTTCGTCCATCTCCACGATGACCAATACCAGCAAGCGAGGATGTCTGGGTGCGTTATTGGGGTTCGGCGTGGTGGGACGGTGGATATCTCCGATACCTTCGACATCTTGCACGACCCCGACCCCGGAACCTTCGACCGCGCCTTACTGGAGAAGGATCAGGAGATCTACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACACGGGAATCCACCATGGGGACTACACCGACATGCAAATCCACCAGACCTTGATGGATGCTAATGGAACAGCCTTTTATCTTCTATTAAATCCTGCAATCAACTTTTCCCATAAGGATATTCCTGTGACTATTTATGAAAGAGTGTTGTGCAATTCCGATGGGAGTCCCCCGGTCAGCTTTGTCCAAGGAAACTATACAGTTGAGATTGTAGGAGCAGAGAGGATATCTTTAGACCATGCTGATTTTCTCTATCCAAGTCCATGCGTAGTCTTCGATGTTCTTGCACCACCTCTTGGAGAAAAAAAAAATGCATTTAGGACGATGTTGTTTGAAACCCCTTCGGGATTTGCAATGTTCCGTGTTTCGGATGTTTTATTTAGATATCCGGAGGACATATGGTCGAGTTTTACTGATCCACATACTGCACACCAGGTCGTTCGTACCATTGGTTTTATTGAGGTTGGTGACAAATCTGTTGTATGGGATAATGATATTGGTCCTGGCGAGGATATAGAGCACTTTATCCTAAAATTTCCAATTAAATCATTGGTTGTTCCAGATGCACAGCTTAAATTTATTATTGAGAAAAACCTTAACATTAGCTGTTGGTTTAATGGGCGTATTGTTCCTGGGTTGATTTGGGGACTAAATTATGCCCTGGATGAATTTGTGCCTCGAGAGAAGGGCAACCTATCAAATGAACGCCATTTTCCACTGAGCAAGCAACTGCATGAGCAGTTAAAAGCATATGGATTTAGTATCTCACCACAATTGATTAACAGAGAGTTTATAACCAGTTTTGGTTACTTAAATTATCTGGAACGTACTTCAAATTGCATTTCCGGAGATTTACACCAGAAATTTGATCGTTTCTTTTGTGGACTTGAGATGTCTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTTCTTTTGGCGGTTCCTAAGAAGAAGTGTAACACGATATCTCGTCTTAAGCGTATGGAGGCAGAGGATAGGGGTACAGGGCTTGGGCATCCTTGGGTTTGCGCTGCTGCTGTTGCGGTGGGCTTCGGGGTTATGGCAGGATTGTGCATTGCGATGAAGCGAGCAAATTAGAACTGGGTAATAGGACCAATGAGACTAAATTAGGATCCGTATGTACGGTGACAAACAACCTTTGTGATCTAAAGTG ]
[-] EMBL CA761773 [ CTGAGTTGATTTGGGGACTAAATTATGCCCTGGACGAATTTGTGCCTCGAGAGAAGGGCAACCTATCAGATGAACGCCATTTTCCACTGAGCAAGCAACTGCATGAGCAGTTAAAAGCATATGGATTTAGTATCTCACCACAATTGATTAACAGAGAGTTTATAACCAGTTTTGGTTACTTAAATTATCTGGAACGTACTTCAAATTGCATTTCCGGAGATTTACACCAGAAATTTGATCGTTTCTTTTGTGGACTTGAGATGTCTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTTCTTTTGGCGGTTCCTAAGAAGAAGTGTAACACAATATCTCGTCTTGAGCGTATGGAGGCAGAGGATAGGGGTACAGGGCTTGGGCATCCTTGGGTTTGCGCTGCTGCTGTTGCGGTGGGCTTCGGGGTTATGGCAGGATTGTGCATTGCGATGAAGCGAGCAAATTAGAACTGGGTAATAGGACCAATGAGACTAAATTAGGATCCGTATGTACGGTGACAAACAACTTTTGTGATCTAAAGTGACCAGTAAACAACCGCCAGTTCATCCTATCACGTGGCACAGTAATTTCTTAAATAAATCTCAAAAAAA]
consensusID : consensus_5814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[TGGAANNNNNTTTTANNTTNTATTAAATNNTGCAATCAACTTTTCCCATAAGGATATTCCTGTGACTATTTATGAAAGAGCGTTGTGCAATTCCGATGGGAGTCCCCCGGTGAGCTTTGTCCAAGGAAACTATACAGTTGAGCCATGTGTTTGTTTAGTTATAAATACTAGTTAANNNCGTACAACGATGTTTTATTGAAGATTGTAGGACGAGAGAGGATATCTTTNNNNNATNT]
[+] EMBL D42294 [TGGAANNNNNTTTTANNTTNTATTAAATNNTGCAATCAACTTTTCCCATAAGGATATTCCTGTGACTATTTATGAAAGAGCGTTGTGCAATTCCGATGGGAGTCCCCCGGTGAGCTTTGTCCAAGGAAACTATACAGTTGAGCCATGTGTTTGTTTAGTTATAAATACTAGTTAANNNCGTACAACGATGTTTTATTGAAGATTGTAGGACGAGAGAGGATATCTTTNNNNNATNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5814#0 GCTCCGCCGCCATTTTAGGGATCCCTCGGCGCGTGGCCTCCGGTGCGGTGATGCCGCCGC 60
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 ATGAGGACGCCCTCGATGCCGGCGCCGTTGACGTGCTCACCTTCAGGCTCCACCCCCTCG 120
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CTGTCTTGAAATTATCCCACCGCATCCGCGAGTTCGTCCATCTCCACGATGACCAATACC 180
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 AGCAAGCGAGGATGTCTGGGTGCGTTATTGGGGTTCGGCGTGGTGGGACGGTGGATATCT 240
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CCGATACCTTCGACATCTTGCACGACCCCGACCCCGGAACCTTCGACCGCGCCTTACTGG 300
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 AGAAGGATCAGGAGATCTACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTACT 360
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CCATTGGGACCAATGTGCACGCCACCGACACGGGAATCCACCATGGGGACTACACCGACA 420
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 TGCAAATCCACCAGACCTTGATGGATGCTAATGGAACAGCCTTTTATCTTCTATTAAATC 480
consensus_5814#1 -------------------------------TGGAANNNNNTTTTANNTTNTATTAAATN 29
***** ***** ** ********
consensus_5814#0 CTGCAATCAACTTTTCCCATAAGGATATTCCTGTGACTATTTATGAAAGAGTGTTGTGCA 540
consensus_5814#1 NTGCAATCAACTTTTCCCATAAGGATATTCCTGTGACTATTTATGAAAGAGCGTTGTGCA 89
************************************************** ********
consensus_5814#0 ATTCCGATGGGAGTCCCCCGGTCAGCTTTGTCCAAGGAAACTATACAGTTGAGAT---TG 597
consensus_5814#1 ATTCCGATGGGAGTCCCCCGGTGAGCTTTGTCCAAGGAAACTATACAGTTGAGCCATGTG 149
********************** ****************************** **
consensus_5814#0 TAGGAGCAGAGA-GGATATC--TTTAGACCATGCTGATTTTCTCTATCCAAGTCCATGCG 654
consensus_5814#1 TTTGTTTAGTTATAAATACTAGTTAANNNCGTACAACGATGTTTTATTGAAGATTGTAGG 209
* * ** * *** ** * * * * * * *** *** * *
consensus_5814#0 -TAGTCTTCGATGTTCTTGCACCACCTCTTGGAGAAAAAAAAAATGCATTTAGGACGATG 713
consensus_5814#1 ACGAGAGAGGATATCTTTNNNNNATNT--------------------------------- 236
*** * ** * *
consensus_5814#0 TTGTTTGAAACCCCTTCGGGATTTGCAATGTTCCGTGTTTCGGATGTTTTATTTAGATAT 773
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CCGGAGGACATATGGTCGAGTTTTACTGATCCACATACTGCACACCAGGTCGTTCGTACC 833
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 ATTGGTTTTATTGAGGTTGGTGACAAATCTGTTGTATGGGATAATGATATTGGTCCTGGC 893
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GAGGATATAGAGCACTTTATCCTAAAATTTCCAATTAAATCATTGGTTGTTCCAGATGCA 953
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CAGCTTAAATTTATTATTGAGAAAAACCTTAACATTAGCTGTTGGTTTAATGGGCGTATT 1013
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GTTCCTGGGTTGATTTGGGGACTAAATTATGCCCTGGATGAATTTGTGCCTCGAGAGAAG 1073
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GGCAACCTATCAAATGAACGCCATTTTCCACTGAGCAAGCAACTGCATGAGCAGTTAAAA 1133
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GCATATGGATTTAGTATCTCACCACAATTGATTAACAGAGAGTTTATAACCAGTTTTGGT 1193
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 TACTTAAATTATCTGGAACGTACTTCAAATTGCATTTCCGGAGATTTACACCAGAAATTT 1253
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GATCGTTTCTTTTGTGGACTTGAGATGTCTGAGGGAGAGTTTGTAAGAGGAGTTGCACAC 1313
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CGTCTCCATTCCATGGAGGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAAT 1373
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GCTGAATTTCTTTTGGCGGTTCCTAAGAAGAAGTGTAACACGATATCTCGTCTTAAGCGT 1433
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 ATGGAGGCAGAGGATAGGGGTACAGGGCTTGGGCATCCTTGGGTTTGCGCTGCTGCTGTT 1493
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GCGGTGGGCTTCGGGGTTATGGCAGGATTGTGCATTGCGATGAAGCGAGCAAATTAGAAC 1553
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 TGGGTAATAGGACCAATGAGACTAAATTAGGATCCGTATGTACGGTGACAAACAACCTTT 1613
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GTGATCTAAAGTGACCAGTAAACAACCGCCAGTTCATCCTATCACGTGGCACAGTAATTT 1673
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CTTAAATAAATCTCAAAAAAA 1694
consensus_5814#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||