These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCGCGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCGCCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT] [+] EMBL AK111341 [CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCGCGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCGCCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT] consensusID : consensus_5816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 466 fasta sequence [GTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCATTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCTCTATACCTCAAATCTGTCCTGAGACAGGATATAGCATTCTTTGATG] [+] EMBL AU181384 [GTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCATTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCTCTATACCTCAAATCTGTCCTGAGACAGGATATAGCATTCTTTGATG] [+] EMBL AU181216 [ AGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCATTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCTCTATACCTCAAATCTGTCCTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5816#0 CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACA 60 consensus_5816#1 -----------------------------------------------------GTACACA 7 ******* consensus_5816#0 CAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGA 120 consensus_5816#1 CAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGA 67 ************************************************************ consensus_5816#0 AGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGA 180 consensus_5816#1 AGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGA 127 ************************************************************ consensus_5816#0 AGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGG 240 consensus_5816#1 AGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGG 187 ************************************************************ consensus_5816#0 CGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCT 300 consensus_5816#1 CGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCT 247 ************************************************************ consensus_5816#0 TCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCA 360 consensus_5816#1 TCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCA 307 ************************************************************ consensus_5816#0 ACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCG 420 consensus_5816#1 ACCAGGCGGTTCT--CAACTTTGTCTACCTGG---GCATCGCGACAGCGGTTGTTTCATT 362 ****** * ** * * * * * * ** *** *** ** consensus_5816#0 CGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCG 480 consensus_5816#1 TCTTCAGGTGGCGTGCTGGACAATGA--CTGGAGAACGGCAGGCGACACGCATTCGATCT 420 * * * * * * ** * ** * * ** * * * * ** * consensus_5816#0 CCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT 540 consensus_5816#1 CTATACCTCAAATCTGTCCTGAGACAGGATATAGC--ATTCT-TTGATG----------- 466 * * * * ** ** * * * * ** **** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||