These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1038 fasta sequence [AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGTACAAGACTACAAGTATACCACAAGAACGAAGGGTCTTTTCGCTCATGCTTATCACCCAAAATTTGGCCCACGAAAATGCATTTATTCACCATGATTTCAGTGAGATTTAAACGGTTTTATTATTATTATTTATTTTCGCAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCGGTAGAAAAATAACTTTTACGGATTTGTTTGTGAAGTGCCTTAGTGAATATAACTATACATGAAAAAATATCTCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK062997 [AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGTACAAGACTACAAGTATACCACAAGAACGAAGGGTCTTTTCGCTCATGCTTATCACCCAAAATTTGGCCCACGAAAATGCATTTATTCACCATGATTTCAGTGAGATTTAAACGGTTTTATTATTATTATTTATTTTCGCAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTT ] [+] EMBL CF302716 [ TGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCGGTAGAAAAATAACTTTTACGGATTTGTTTGTGAAGTGCCTTAGTGAATATAACTATACATGAAAAAATATCTCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCG] [+] EMBL AK062890 [AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5829#0 AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCT 60 consensus_5829#1 AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCT 60 ************************************************************ consensus_5829#0 CGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTG 120 consensus_5829#1 CGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTG 120 ************************************************************ consensus_5829#0 GCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGT 180 consensus_5829#1 GCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGT 180 ************************************************************ consensus_5829#0 CCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCG 240 consensus_5829#1 CCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCG 240 ************************************************************ consensus_5829#0 AGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGG 300 consensus_5829#1 AGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGG 300 ************************************************************ consensus_5829#0 GCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGG 360 consensus_5829#1 GCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGG 360 ************************************************************ consensus_5829#0 CATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGA 420 consensus_5829#1 CATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGA 420 ************************************************************ consensus_5829#0 TAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGA 480 consensus_5829#1 TAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGA 480 ************************************************************ consensus_5829#0 AGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCG 540 consensus_5829#1 AGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCG 540 ************************************************************ consensus_5829#0 GCAAGTACAAGACTACAAGTATACCACAAGAACGAAGGGTCTTTTCGCTCATGCTTATCA 600 consensus_5829#1 GCAAG------------------------------------------------------- 545 ***** consensus_5829#0 CCCAAAATTTGGCCCACGAAAATGCATTTATTCACCATGATTTCAGTGAGATTTAAACGG 660 consensus_5829#1 ------------------------------------------------------------ consensus_5829#0 TTTTATTATTATTATTTATTTTCGCAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAA 720 consensus_5829#1 ---------------------------GTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAA 578 ********************************* consensus_5829#0 TGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACC 780 consensus_5829#1 TGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACC 638 ************************************************************ consensus_5829#0 TGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAA 840 consensus_5829#1 TGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAA 698 ************************************************************ consensus_5829#0 TATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCGGTAGAAAAATAACTTT 900 consensus_5829#1 TATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCG---------------- 742 ******************************************** consensus_5829#0 TACGGATTTGTTTGTGAAGTGCCTTAGTGAATATAACTATACATGAAAAAATATCTCTTT 960 consensus_5829#1 ------------------------------------------------------------ consensus_5829#0 NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1020 consensus_5829#1 ------------------------------------------------------------ consensus_5829#0 AAAAAAAAAAAAAAAAAA 1038 consensus_5829#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||