These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGAGGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGACTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATATTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTCAACAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCCCTTCAGAAGTGGTTTTGGAAGGAATAGGTTTACTACTGTATAGCAGTGTACTATCTGGTCGTTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATCCCGTTCGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGTACCCTGTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGATAGGTATCGACTGGTACCTAGGTATTAAGCAATACCTATCATTCCTCTATTATTTTCTATGGATCAGTATTAAAGAACCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCAC] [+] EMBL CB663200 [TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGAGGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGACTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATATTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTCAACAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCCCTTCAGAAGTGGTTTTGGAAGGAATAGGTTTACTACTGTATAGCAGTGTACTATCTGGTCGTTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATCCCGTTCGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGTACCCTGTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGATAGGTATCGACTGGTACCTAGGTATTAAGCAATACCTATCATTCCTCTATTATTTTCTATGGATCAGTATTAAAGAACCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCAC] consensusID : consensus_5857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AGATATCATTTTGTTCGAACAAGATACCATCGTGTAGCATTTCTCTATTATTCTCTATGGATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCACCGATACTTTTAAGTGAGTGATAAAATACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCATGTTTTGTTATGGTAGCAAAATGCGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATAGCAAGTATCTAATTAATGGCTAAAATAAATAGACAATGTGATTTTACCTAGAAATATTATTTATTGTTACTAATAACTATATATGGATCAATCTTATAGATTAACATAGATAAAAATATATCGCAGGGGACGATAGATTGGGCAACAACCACACCGAGGAGAGATTA] [-] EMBL CB631708 [AGATATCATTTTGTTCGAACAAGATACCATCGTGTAGCATTTCTCTATTATTCTCTATGGATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCACCGATACTTTTAAGTGAGTGATAAAATACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCATGTTTTGTTATGGTAGCAAAATGCGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATAGCAAGTATCTAATTAATGGCTAAAATAAATAGACAATGTGATTTTACCTAGAAATATTATTTATTGTTACTAATAACTATATATGGATCAATCTTATAGATTAACATAGATAAAAATATATCGCAGGGGACGATAGATTGGGCAACAACCACACCGAGGAGAGATTA] consensusID : consensus_5857#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [TTTGTACATAGATATTTTCCAAAATCATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAANAGNTATATCGAAACGTAAACCCTAGGTGATCANCGTNCANAACACTATTACANTATGNCTGCCAGTTATACTATNNCTATNTGTAT] [+] EMBL OSR15532B [TTTGTACATAGATATTTTCCAAAATCATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAANAGNTATATCGAAACGTAAACCCTAGGTGATCANCGTNCANAACACTATTACANTATGNCTGCCAGTTATACTATNNCTATNTGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5857#0 TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGA 60 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 ------------------------------------------------------------ consensus_5857#0 GGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGA 120 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 ------------------------------------------------------------ consensus_5857#0 CTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATA 180 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 -------------------------------------------------------AGATA 5 consensus_5857#0 TTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTC 240 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 TCATTTT---GTTCGAACAA--GATACCATCGTGTAGCATTTCTC-TATTATTCTCTATG 59 consensus_5857#0 AA-CAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCC 299 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 GATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTC----TAACTTAAACATAA 115 consensus_5857#0 CTTCAGAAGTGGTTTTGGAAGGAATAGGTTTAC----TACTGTATAGCAGTGTACTATCT 355 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 TT------ATAATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAA 169 consensus_5857#0 GGTCGTTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATC 415 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 GATATATCGA-AACGTAAACCCTAGGTGATCAACGT-ACAAAACACTAT--TACAATATG 225 consensus_5857#0 CCGTTCGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGT 475 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 CCTGCCAGTTATACTA-TAACTAT-ATGTATTATGCAAC-CTTATTAGGT---CACCGAT 279 consensus_5857#0 ACCCTGTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGA--TAGGTATCGA 533 consensus_5857#2 ------------------------------------------------------------ consensus_5857#1 ACTTT-TAAGTGAGTGATAAAATACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCAT 338 consensus_5857#0 CTGGTACCTAGGTATTAAGCAATACCTATCATTCCT--------CTATTATTTTCTATGG 585 consensus_5857#2 -----------------------------------------------------TTTGTAC 7 consensus_5857#1 GTTTTGTTATGGTAGCAAAATGCGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATA 398 * consensus_5857#0 ATCAGTATTAAAGAACCGACATAATTAAATATAGA--GTAGTCTAACTTAAACATAATTA 643 consensus_5857#2 ATAGATATTTTCCAAA-ATCATAATTAAATATAGA--GTAGTCTAACTTAAACATAATTA 64 consensus_5857#1 GCAAGTATCTAATTAATGGCTAAAATAAATAGACAATGTGATTTTACCTAGAAATATTAT 458 *** * * ** ****** * * ** * * ** ** * *** * consensus_5857#0 TAATTTTGGAAAATATCTATGTACAAACTAATCT---ACACAACCATGCAAAAAGATATA 700 consensus_5857#2 TAATTTTGGAAAATATCTATGTACAAACTAATCT---ACACAACCATGCAAANAGNTATA 121 consensus_5857#1 TTATTGTTACTAATAACTATATATGGATCAATCTTATAGATTAACATAGATAAAAATATA 518 * *** * **** **** ** * ***** * * * *** * * * **** consensus_5857#0 TCGAAACGTAAACCCTAGGT-GATCAACGTACAAAACACTATTACAATATGCCTGCCAGT 759 consensus_5857#2 TCGAAACGTAAACCCTAGGT-GATCANCGTNCANAACACTATTACANTATGNCTGCCAGT 180 consensus_5857#1 TCGCAGGG--GACGATAGATTGGGCAACAACCACACCGAGGAGAGATTA----------- 565 *** * * ** *** * * ** * ** * * * * ** consensus_5857#0 TATACTATAACTATATGTATTATGCAACCTTATTAGGTCAC 800 consensus_5857#2 TATACTATNNCTATNTGTAT--------------------- 200 consensus_5857#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||