cluster # 5875

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Oryza sativa
cluster # 5875 cluster # 5875 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5875#0 length = 674 sequences # 3

consensusID : consensus_5875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 674
fasta sequence

                              [ATACGCTACGTAACGGCTGACTTGTTTTTTTTTTTTTTTT-----ATATATAGCCGGAGCTTCCATATATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACANGGGGGGAGACATCATCGAATCANAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTANTTGCCACCANACTCCTCGCAGCCCGGGGGCTTGTTAGCGATGAAACCTGATGAGCCTGCACCTGCCCTGACTTTGTTCGAAACCCAATGATACGGAACAAATGCATCCAGGGTTACCCCTCCTTGGCCCCTCCCACTCCCTTGAAACCCTGGTTGGNTTNCCGTGCCCCCCAACTTGGGCACTTCCCCATTGTCCCATTCCTNCACCTTATTTCCGGGGNTTNTTTGTTCCCNGGNTAAAAATCCCACCTTTGTGAATCCCAGGCGGGCCCCCTTTGAAAGANGNTTCCATTTGCTCCGAGTCCCCCCGTTACCGTGAGTNGAAAGTTTCAATTTTNTCCCATCGCCCTGNTCCTATTTGCCCTTTAATTCCANGATTCCAAAGGGGAAG]

[+] EMBL CF299765             [ATACGCTACGTAACGGCTGACTTGTTTTTTTTTTTTTTTT     ATATATAGCCGGAGCTTCCATATATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTTAAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AU198086             [                    tTTTTTTTTTTTTTTTTTTTAAAAAATATATAGCCGGAGCTTCCATATATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCANATACCACTNTTACATCAAGTCANANAGAGATCAGGNGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACANGGGGGGAGACATCATCGAATCANAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTANTTGCCACCANACTCCTCGCAGCCCGGGGGCT                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BE229089             [                                                  TAGCCGGAGCTTCCATATATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCGAATCAGAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTTAGCGATGAAACCTGATGAGCCTGCACCTGCCCTGACTTTGTTCGAAACCCAATGATACGGAACAAATGCATCCAGGGTTACCCCTCCTTGGCCCCTCCCACTCCCTTGAAACCCTGGTTGGNTTNCCGTGCCCCCCAACTTGGGCACTTCCCCATTGTCCCATTCCTNCACCTTATTTCCGGGGNTTNTTTGTTCCCNGGNTAAAAATCCCACCTTTGTGAATCCCAGGCGGGCCCCCTTTGAAAGANGNTTCCATTTGCTCCGAGTCCCCCCGTTACCGTGAGTNGAAAGTTTCAATTTTNTCCCATCGCCCTGNTCCTATTTGCCCTTTAATTCCANGATTCCAAAGGGGAAG]




>consensus_5875#0
ATACGCTACGTAACGGCTGACTTGTTTTTTTTTTTTTTTTATATATAGCCGGAGCTTCCA
TATATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTA
CATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAAT
CAAAAGACGATGAACAAACTGGGAACACACGAAACANGGGGGGAGACATCATCGAATCAN
AGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTANTTGCCACCANACTCCT
CGCAGCCCGGGGGCTTGTTAGCGATGAAACCTGATGAGCCTGCACCTGCCCTGACTTTGT
TCGAAACCCAATGATACGGAACAAATGCATCCAGGGTTACCCCTCCTTGGCCCCTCCCAC
TCCCTTGAAACCCTGGTTGGNTTNCCGTGCCCCCCAACTTGGGCACTTCCCCATTGTCCC
ATTCCTNCACCTTATTTCCGGGGNTTNTTTGTTCCCNGGNTAAAAATCCCACCTTTGTGA
ATCCCAGGCGGGCCCCCTTTGAAAGANGNTTCCATTTGCTCCGAGTCCCCCCGTTACCGT
GAGTNGAAAGTTTCAATTTTNTCCCATCGCCCTGNTCCTATTTGCCCTTTAATTCCANGA
TTCCAAAGGGGAAG

clustalw multiple alignements is not computed in this case