These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCTCCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGAATGGTCTGGCGAGGTTCGCAGCATTGTTTATTCATCTGATGGAAAATCTGTATCTGTTATTTATCGCGTGACTCTCCATGGAACTGATGCAGAGATCTACAGAGAAGCCACTGGAACTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTTTTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTCATAAATGCTTA] [+] EMBL CA753737 [CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCTCCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGAATGGTCTGGCGAGGTTCGCAGCATTGTTTATTCATCTGATGGAAAATCTGTATCTGTTATTTATCGCGTGACTCTCCATGGAACTGATGCAGAGATCTACAGAGAAGCCACTGGAACTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTTTTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTCATAAATGCTTA] consensusID : consensus_5878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCG-GCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGG-TTCTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCCTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGTTCTGCGAAG-TGTGAACTACATGTAATTG-TGGTTCGTTCGTGTAAAAAATTGGGATTGATTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTTTGAGAGGAGCTAGATTATATATTTA] [-] EMBL BI799361 [TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCG GCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGG TTCTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCCTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGTTCTGCGAAG TGTGAACTACATGTAATTG TGGTTCGTTCGTGTAAAAAATTGGGATTGATTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTTTGAGAGGAGCTAGATTATATATTTA] [-] EMBL BI799275 [TCCTCGCGCGCCCCTTCGCCGCGAAGG CCGCGCGTCGCGCCGG CGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCGTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGTTCTG GAAGTTGTGAACTACATGTAATTGTTGGTTCG TCGTGTAAAAAA TGGGATTGATTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5878#0 CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCT 60 consensus_5878#1 ------------------------------------------------------------ consensus_5878#0 CCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCG 120 consensus_5878#1 -----------------------------TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCG 31 ******************************* consensus_5878#0 CGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGG 180 consensus_5878#1 CGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGG 91 ************************************************************ consensus_5878#0 CGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCT 240 consensus_5878#1 CGGCGAGGTGGCCG-GCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCT 150 ************** ********************************************* consensus_5878#0 CAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTT 300 consensus_5878#1 CAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGG-TT 209 ********************************************************* ** consensus_5878#0 CTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGA 360 consensus_5878#1 CTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATG-GCCTATCGAAAT 268 ********************** * * * * ** * * * consensus_5878#0 ATGGTCTGGCGAGGTTCGCAGCATTG---TTTATTCATCTGATGGAAAATCTGTATCTGT 417 consensus_5878#1 CCTCCCTTCCTACACAC-CAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGT 327 ** * * * ** ** * * * ** * * * ** * * ** consensus_5878#0 TATTTATCGCGTGACTCTCCATG-GAACTGATGCAGAGATCTACAGAGAAGCCACTGGAA 476 consensus_5878#1 TTTTAACGCCTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTC-CTAGAT 386 * ** * * ** * ** * * * ** * * * **** * * * ** ** consensus_5878#0 CTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTT 536 consensus_5878#1 TATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGT 446 * * ** * * * ** ** ** * * * * consensus_5878#0 TTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTC-A 595 consensus_5878#1 TCTGCGAAGTGTGAACTACATGTAATTGTGG--TTCGTTCGTGTAAAAAATTGGGATTGA 504 * ** ** ** ** * * *** *** * * * * ** * * consensus_5878#0 TAAATGCTTA-------------------------------------------------- 605 consensus_5878#1 TTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTTTGAGAGGAGCTAGATTATATATTT 564 * *** * consensus_5878#0 - consensus_5878#1 A 565 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||