Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5881 cluster # 5881       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5881#0 length = 2117 sequences # 3  

consensusID : consensus_5881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2117
fasta sequence
                              [CGTCTTCTCTTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGCGGCGAGCCATGG-ACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGTCGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGCAGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAAATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGGAAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATGAATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGCCTCCGGGAGTGGAGGCTACCGTTCCATGGCTGC-AAAAAAAGGATATTGCTGATGGACCTAGCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTAAGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGAAGACA-GGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATTTACCAGCATCCATATATGTCCGTGT-GTCTG-AAAATCGAATGGACCTTCTGAGGGCTGTAATAATTGGACCTCAAGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGCTCAATTTACTAGTACTTATCCATCTACTCCTCCAGTGGTATATTATCATTCTGGAGGGCTTCGGCTCAATCCAAATTTATATGCTTGTGGAAAAGTCTGTCTTAGCCTGCTAGGCACCTGGTCTGGTAGTGGTTGTGAGAAGTGGAACTCAGCTCACTCAACTATGCTACAGGTTTTAGTCTCCATTCAAGCTCTCGTATTGAATGAGAACCCATACTTCAATGAGCCAGGATATGAGACCTATGCCAACAGTGCTACTGGACAGAAGAGTGCCATGGACTATAATGATACCACATTTCAGTACTCATGCAGGACGATGTTATACTCACTCCGTAGATCTCCACAGCACTTTGATGCCCTTGTAGCTGGCCACTTCCGCCACCGTGGTCATGCCATTCTGGCTGCATGCAAATATTACATGGAAGGTCATAAGGTTGGGTCCGTAGTCCCTAACGAGGACGAGGAGGATGCGAAGCAGCAGGACGACACTGATGCAGGAGGATCCGGCAGCAGCAGCGGAGCAAAGCCGCAGCCTGAAAAGCCAGACCTGTGCAAGGGCCGTGCTGCATCCTTCAAAACCAACATGGCCGTTCTGTTTGAGGAGCTCTTGATGGAATTCAACGTCAAGGGTGCTGACACCAAGAAGTTCTGCGATGAGAAGTTGAAGAAGAACCAGCAGGCTGCTGCTGCTGCTCGCTGAAGAGGCCCCCCAGCTGCAGCTACAAAACGCACAGATCTTCTCTAGTTCTGAGGGTTTCATAATGAAGCGAAAACCGTAGAAAGGGGTTTTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGTTGTACAGGTTGAGTGTGTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAGCAAGGTGGCGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGTTACTTGCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTTTTTCTTGTGAGTTCACTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACTAATAGATTTAATTCAACCTTGAGTTGACATTTATCTTCTCGGAAACATACACAGATAATGGTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGAGAAGATAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTTTTTTTTTAAAAAAAAAA]

[+] EMBL AK069430             [CGTCTTCTCTTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGCGGCGAGCCATGG ACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGTCGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGCAGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAAATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGGAAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATGAATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGCCTCCGGGAGTGGAGGCTACCGTTCCATGGCTGC AAAAAAAGGATATTGCTGATGGACCTAGCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTAAGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGAAGACA GGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATTTACCAGCATCCATATATGTCCGTGT GTCTG AAAATCGAATGGACCTTCTGAGGGCTGTAATAATTGGACCTCAAGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGCTCAATTTACTAGTACTTATCCATCTACTCCTCCAGTGGTATATTATCATTCTGGAGGGCTTCGGCTCAATCCAAATTTATATGCTTGTGGAAAAGTCTGTCTTAGCCTGCTAGGCACCTGGTCTGGTAGTGGTTGTGAGAAGTGGAACTCAGCTCACTCAACTATGCTACAGGTTTTAGTCTCCATTCAAGCTCTCGTATTGAATGAGAACCCATACTTCAATGAGCCAGGATATGAGACCTATGCCAACAGTGCTACTGGACAGAAGAGTGCCATGGACTATAATGATACCACATTTCAGTACTCATGCAGGACGATGTTATACTCACTCCGTAGATCTCCACAGCACTTTGATGCCCTTGTAGCTGGCCACTTCCGCCACCGTGGTCATGCCATTCTGGCTGCATGCAAATATTACATGGAAGGTCATAAGGTTGGGTCCGTAGTCCCTAACGAGGACGAGGAGGATGCGAAGCAGCAGGACGACACTGATGCAGGAGGATCCGGCAGCAGCAGCGGAGCAAAGCCGCAGCCTGAAAAGCCAGACCTGTGCAAGGGCCGTGCTGCATCCTTCAAAACCAACATGGCCGTTCTGTTTGAGGAGCTCTTGATGGAATTCAACGTCAAGGGTGCTGACACCAAGAAGTTCTGCGATGAGAAGTTGAAGAAGAACCAGCAGGCTGCTGCTGCTGCTCGCTGAAGAGGCCCCCCAGCTGCAGCTACAAAACGCACAGATCTTCTCTAGTTCTGAGGGTTTCATAATGAAGCGAAAACCGTAGAAAGGGGTTTTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGTTGTACAGGTTGAGTGTGTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAGCAAGGTGGCG                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU181867             [         TTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGCGGCGAGCCATGGNACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGTCGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGCAGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAAATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGGAAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATGAATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGCCTCCGGGAGTGGAGGCTACCGTTCCATGGCTGCAAAAAAAAGGATATTGCTGATGGACCTAGCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTAAGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGAAGACAGGGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATTTACCAGCATCCATATATGTCCGTGTGGTCTGAAAAATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI812298             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAGCAAGGTGCGGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGTTACTTGCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTTTTTCTTGTGAGTTCACTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACTAATAGATTTAATTCAACCTTGAGTTGACATTTATCTTCTCGGAAACATACACAGATAATGGTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGAGAAGATAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTTTTTTTTTAAAAAAAAAA]


>consensus_5881#0 CGTCTTCTCTTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGC GGCGAGCCATGGACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGT CGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGC AGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAA ATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGG AAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATG AATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGC CTCCGGGAGTGGAGGCTACCGTTCCATGGCTGCAAAAAAAGGATATTGCTGATGGACCTA GCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTA AGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGA AGACAGGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATT TACCAGCATCCATATATGTCCGTGTGTCTGAAAATCGAATGGACCTTCTGAGGGCTGTAA TAATTGGACCTCAAGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGCTCAATTTA CTAGTACTTATCCATCTACTCCTCCAGTGGTATATTATCATTCTGGAGGGCTTCGGCTCA ATCCAAATTTATATGCTTGTGGAAAAGTCTGTCTTAGCCTGCTAGGCACCTGGTCTGGTA GTGGTTGTGAGAAGTGGAACTCAGCTCACTCAACTATGCTACAGGTTTTAGTCTCCATTC AAGCTCTCGTATTGAATGAGAACCCATACTTCAATGAGCCAGGATATGAGACCTATGCCA ACAGTGCTACTGGACAGAAGAGTGCCATGGACTATAATGATACCACATTTCAGTACTCAT GCAGGACGATGTTATACTCACTCCGTAGATCTCCACAGCACTTTGATGCCCTTGTAGCTG GCCACTTCCGCCACCGTGGTCATGCCATTCTGGCTGCATGCAAATATTACATGGAAGGTC ATAAGGTTGGGTCCGTAGTCCCTAACGAGGACGAGGAGGATGCGAAGCAGCAGGACGACA CTGATGCAGGAGGATCCGGCAGCAGCAGCGGAGCAAAGCCGCAGCCTGAAAAGCCAGACC TGTGCAAGGGCCGTGCTGCATCCTTCAAAACCAACATGGCCGTTCTGTTTGAGGAGCTCT TGATGGAATTCAACGTCAAGGGTGCTGACACCAAGAAGTTCTGCGATGAGAAGTTGAAGA AGAACCAGCAGGCTGCTGCTGCTGCTCGCTGAAGAGGCCCCCCAGCTGCAGCTACAAAAC GCACAGATCTTCTCTAGTTCTGAGGGTTTCATAATGAAGCGAAAACCGTAGAAAGGGGTT TTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGT TGTACAGGTTGAGTGTGTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAA GTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAG CAAGGTGGCGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGTTACTT GCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTT TTTCTTGTGAGTTCACTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACT AATAGATTTAATTCAACCTTGAGTTGACATTTATCTTCTCGGAAACATACACAGATAATG GTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGAGAAGA TAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTT TTTTTTTAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)