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Oryza sativa
cluster # 5889 cluster # 5889       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5889#0 length = 1252 sequences # 3  

consensusID : consensus_5889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1252
fasta sequence
                              [AGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCCGGACCCTGTCGCCCCACGAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGCAGAGCAACCAGAGACCAGCAGAGGAAGAGAGATTGTGAGACAGAGAAAGATCAGGAGAGGAAGTAGTAGCTGAAATGGTGAAGATTCCGAGCCCGAGGAGGCTGTTCAGGAGCAGGTCCAAGAGCATCGGCGGCGCCGGCGGCGGCGTCGGCGCGGACATCTGCGCGATGGTCGCGGAGCACGAGAAGATCGAGTGGGAGGTGCGGCCGGGCGGGATGCTGGTGCAGAAGCGGCGGGCGCCGGAGGAGCAGGACGACGGCAGCAGCAGCATGTCCGCCCACTCCGGCG-CGGACGCCATCGTCGTCAGGGTCTCCACCGGGTGGCAATGGCACGACGTCTCCATCGACTCCACCGCCACCTTCGGTGATCTGAAGGTGATGCTGTCGCTGGTGACCGGGCTGTGGCCGAGGGACCAGAGGCTGCTGTACAAGGGGAAGGAGAGAGACGACGGCGATCACCTGCACATGGTCGGAGTCCAGGACAAGGACAAGGTGCTGCTGCTGGAAGACCCGGCCGTCAAGGAGAGGAAGCTCCGGTCGACCACCCTGGCGCAGCTCATGGGAGTGCCCTGCCATTCCTTCATCGAAGTCTAGAAATTAAATTAAACCCGCCATTTTGACTTGTTCTTTTTTGGTCTGCTTGCAAGAGTGACACCACGCAAAGATCCTTTTTTGTTTCCAGCTCAATCGTCTAACTGCATTGTTCGGAGTCACTGTTCCATTTCTCGAGTTCGAGGGTAGTCTGGATTCAGCCGATTGAATCGAATCGTCTGCACCAATAGTCCAATACGACACAAAGACATAATGTAAATTAATGTAATTAGATAATGTCAGTGTGTGTTGTGTATTATTTCAGCTGTAATACTTCTTACCCCATGTATATTCTCCTACTGCAATTTGCAATACAGATTATATGATGC]

[+] EMBL AK058550             [AGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCCGGACCCTGTCGCCCCACGAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGCAGAGCAACCAGAGACCAGCAGAGGAAGAGAGATTGTGAGACAGAGAAAGATCAGGAGAGGAAGTAGTAGCTGAAATGGTGAAGATTCCGAGCCCGAGGAGGCTGTTCAGGAGCAGGTCCAAGAGCATCGGCGGCGCCGGCGGCGGCGTCGGCGCGGACATCTGCGCGATGGTCGCGGAGCACGAGAAGATCGAGTGGGAGGTGCGGCCGGGCGGGATGCTGGTGCAGAAGCGGCGGGCGCCGGAGGAGCAGGACGACGGCAGCAGCAGCATGTCCGCCCACTCCGGCG CGGACGCCATCGTCGTCAGGGTCTCCACCGGGTGGCAATGGCACGACGTCTCCATCGACTCCACCGCCACCTTCGGTGATCTGAAGGTGATGCTGTCGCTGGTGACCGGGCTGTGGCCGAGGGACCAGAGGCTGCTGTACAAGGGGAAGGAGAGAGACGACGGCGATCACCTGCACATGGTCGGAGTCCAGGACAAGGACAAGGTGCTGCTGCTGGAAGACCCGGCCGTCAAGGAGAGGAAGCTCCGGTCGACCACCCTGGCGCAGCTCATGGGAGTGCCCTGCCATTCCTTCATCGAAGTCTAGAAATTAAATTAAACCCGCCATTTTGACTTGTTCTTTTTTGGTCTGCTTGCAAGAGTGACACCACGCAAAGATCCTTTTTTGCTTCCAGCTCAATCGTCTAACTGCATTGTTCGGAGTCACTGTTCCATTTCTCGAGTTCGAGGGTAGTCTGGATTCAGCCGATTGAATCGAATCGTCTGCACCAATAGTCCAATACGACACAAAGACATAATGTAAATTAATGTAATTAGATAATGTCAGTGTGTGTTGTGTATTATTTCAGCTGTAATACTTCTTACCCCATGTATATTCTCCTACTGCAATTTGCAATAC              ]
[-] EMBL CB628678             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAAGATCGAGTGGGAGGTGCGGCCGGGCGGGATGCTGGTGCAGAAGCGGCGGGCGCCGGAGGAGCAGGACGACGGCAGCAGCAGCATGTCCGCCCACTCCGGCGNCGGACGCCATCGTCGTCAGGGTCTCCACCGGGTGGCAATGGCACGACGTCTCCATCGACTCCACCGCCACCTTCGGTGATCTGAAGGTGATGCTGTCGCTGGTGACCGGGCTGTGGCCGAGGGACCAGAGGCTGCTGTACAAGGGGAAGGAGAGAGACGACGGCGATCACCTGCACATGGTCGGAGTCCAGGACAAGGACAAGGTGCTGCTGCTGGAAGACCCGGCCGTCAAGGAGAGGAAGCTCCGGTCGACCACCCTGGCGCAGCTCATGGGAGTGCCCTGCCATTCCTTCATCGAAGTCTAGAAATTAAATTAAACCCGCCATTTTGACTTGTTCTTTTTTGGTCTGCTTGCAAGAGTGACACCACGCAAAGATCCTTTTTTGTTTCCAGCTCAATCGTCTAACTGCATTGTTCGGAGTCACTGTTCCATTTCTCGAGTTCGAGGGTAGTCTGGATTCAGCCGATTGAATCGAATCGTCTGCACCAATAGTCCAATACGACACAAAGACATAATGTAAATTAATGTAATTAGATAATGTCAGTGTGTGTTGTGTATTATTTCAGCTGTAATACTTCTTACCCCATGTATATTCTGCTACTGCAATTTGCAATACAGATTATATGATGC]
[+] EMBL CF197300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGATCACCTGCACATGGTCGGAGTCCAGGACAAGGACAAGGTGCTGCTGCTGGAAGACCCGGCCGTCAAGGAGAGGAAGCTCCGGTCGACCACCCTGGCGCAGCTCATGGGAGTGCCCTGCCATTCCTTCATCGAAGTCTAGAAATTAAATTAAACCCGCCATTTTGACTTGTTCTTTTTTGGTCTGCTTGCAAGAGTGACACCACGCAAAGATCCTTTTTTGTTTCCAGCTCAATCGTCTAACTGCATTGTTCGGAGTCACTGTTCCATTTCTCGAGTTCGAGGGTAGTCTGGATTCAGCCGATTGAATCGAATCGTCTGCACCAATAGTCCAATACGACACAAAGACATAATGTAAATTAATGTAATTAGATAATGTCAGTGTGTGTTGTGTATTATTTCAGCTGTAATACTTCTTACCCCATGTATATTCTCCTACTGCAATTTGCAATACAaaaaaa       ]


>consensus_5889#0 AGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCGGCC GCGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTCCCC TGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCCGGACCCTGTCGCCCCACGA GGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGT CCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAA AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGCAGAGCAACCAGAGACCAGCAGAGGAAG AGAGATTGTGAGACAGAGAAAGATCAGGAGAGGAAGTAGTAGCTGAAATGGTGAAGATTC CGAGCCCGAGGAGGCTGTTCAGGAGCAGGTCCAAGAGCATCGGCGGCGCCGGCGGCGGCG TCGGCGCGGACATCTGCGCGATGGTCGCGGAGCACGAGAAGATCGAGTGGGAGGTGCGGC CGGGCGGGATGCTGGTGCAGAAGCGGCGGGCGCCGGAGGAGCAGGACGACGGCAGCAGCA GCATGTCCGCCCACTCCGGCGCGGACGCCATCGTCGTCAGGGTCTCCACCGGGTGGCAAT GGCACGACGTCTCCATCGACTCCACCGCCACCTTCGGTGATCTGAAGGTGATGCTGTCGC TGGTGACCGGGCTGTGGCCGAGGGACCAGAGGCTGCTGTACAAGGGGAAGGAGAGAGACG ACGGCGATCACCTGCACATGGTCGGAGTCCAGGACAAGGACAAGGTGCTGCTGCTGGAAG ACCCGGCCGTCAAGGAGAGGAAGCTCCGGTCGACCACCCTGGCGCAGCTCATGGGAGTGC CCTGCCATTCCTTCATCGAAGTCTAGAAATTAAATTAAACCCGCCATTTTGACTTGTTCT TTTTTGGTCTGCTTGCAAGAGTGACACCACGCAAAGATCCTTTTTTGTTTCCAGCTCAAT CGTCTAACTGCATTGTTCGGAGTCACTGTTCCATTTCTCGAGTTCGAGGGTAGTCTGGAT TCAGCCGATTGAATCGAATCGTCTGCACCAATAGTCCAATACGACACAAAGACATAATGT AAATTAATGTAATTAGATAATGTCAGTGTGTGTTGTGTATTATTTCAGCTGTAATACTTC TTACCCCATGTATATTCTCCTACTGCAATTTGCAATACAGATTATATGATGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)