These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGCGCGAGCCCGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAATGGACCGGGTTACCCCTGTAGATAGCGCGAACACTCGCGTGCCCCGAAAGGGAATCAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAAATCAAGGAACGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATACTTTATATGGATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGGTTTTACGCTCATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAATGTTTGTTTATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATTCTAAATATTATATGGTTTGGTCAATCCC] [+] EMBL AW155388 [GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGCGCGAGCCCGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAATGGACCGGGTTACCCCTGTAGATAGCGCGAACACTCGCGTGCCCCGAAAGGGAATCAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAAATCAAGGAACGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATACTTTATATGGATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGGTTTTACGCTCATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAATGTTTGTTTATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATTCTAAATATTATATGGTTTGGTCAATCCC] consensusID : consensus_5922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [TGGTTACGGTGCCGAA-TGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGG-GCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGNCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTA] [+] EMBL AU100847 [TGGTTACGGTGCCGAA TGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGG GCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGNCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTA] [+] EMBL AU100846 [TGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5922#0 -------GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAG 53 consensus_5922#1 TGGTTACGGTGCCGAA-TGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAG 59 ********* ******************************************* consensus_5922#0 ACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTG 113 consensus_5922#1 ACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTG 119 ************************************************************ consensus_5922#0 CCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATC 173 consensus_5922#1 CCGAATCAACTAGCCCCGAAAATGGATGG-GCTGAAGCGCGCGACCCACACCAGGCCATC 178 ***************************** ****************************** consensus_5922#0 TGGGCGAGCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGC 233 consensus_5922#1 TGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGA-ACTGCGCGCTAACC 237 ****************************** ************* * * * * consensus_5922#0 GCGAGCCCGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAAT 293 consensus_5922#1 TAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAG-GACGGTGGT---CATGGAAGT 293 ** *** * * **** * *** * * ** * ** ** * consensus_5922#0 GAGAACTTTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTA 353 consensus_5922#1 CGAAATCCGCTAAG--GAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCC---GAA 348 ** *** ** * * * * * ** * *** ** * * * consensus_5922#0 AGCCGATCCTAATGGACCGGGTTACCCCTGT-AGATAGCGCGAACACTCGC-GTGCCCCG 411 consensus_5922#1 AATGGATGNCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCG 408 * *** ** * ** * **** ** * * *** ******* consensus_5922#0 AAAGGGAATCAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAA 471 consensus_5922#1 ATGAGTA----------------------------------------------------- 415 * * * consensus_5922#0 ATCAAGGAACGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATAC 531 consensus_5922#1 ------------------------------------------------------------ consensus_5922#0 TTTATATGGATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGG 591 consensus_5922#1 ------------------------------------------------------------ consensus_5922#0 TTTTACGCTCATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAA 651 consensus_5922#1 ------------------------------------------------------------ consensus_5922#0 TGTTTGTTTATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATT 711 consensus_5922#1 ------------------------------------------------------------ consensus_5922#0 CTAAATATTATATGGTTTGGTCAATCCC 739 consensus_5922#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||