These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGCTGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCACGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGGTGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTAAGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTTTAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG] [-] EMBL AA750783 [TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACA ] [+] EMBL AA753531 [ tttttttTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGCTGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCACGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGGTGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTAAGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTTTAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG] consensusID : consensus_5937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TTTTTTTTTTTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGCATGCAACATTGCTGCTGCAGGAGCGCCATTGGCTGCGACATGAACATGGCTGTGGAGCTACCCATGCCCCCCCTTGTCTCGTCCTCT] [+] EMBL CA759531 [TTTTTTTTTTTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGCATGCAACATTGCTGCTGCAGGAGCGCCATTGGCTGCGACATGAACATGGCTGTGGAGCTACCCATGCCCCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5937#0 TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAG 60 consensus_5937#1 ------------------------------------------TTTTTTTTTTTTTGCAAG 18 * * ******** consensus_5937#0 TCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGT 120 consensus_5937#1 TCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTAGTGTTTGCACACGATAGT 78 ******************************* **************************** consensus_5937#0 ATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGA 180 consensus_5937#1 ATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGA 138 ************************************************************ consensus_5937#0 AGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTT 240 consensus_5937#1 AGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTT 198 *********** ************************************************ consensus_5937#0 CATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTG 300 consensus_5937#1 CATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTG 258 ************************************************************ consensus_5937#0 GGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGC 360 consensus_5937#1 G-CAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTG-CATGCAACATTGC 316 * ******************************************** ************* consensus_5937#0 TGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCA 420 consensus_5937#1 TGCTGCAGGAGC-GCCATTGGCTGCGACATGAACATGGCTGTGGAGCTACCCATGCCCC- 374 ******* ** * ************ ******************* ************* consensus_5937#0 CGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGG 480 consensus_5937#1 CCCTTGTCTCGTCCTCT------------------------------------------- 391 * *** ** * consensus_5937#0 TGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTA 540 consensus_5937#1 ------------------------------------------------------------ consensus_5937#0 AGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTT 600 consensus_5937#1 ------------------------------------------------------------ consensus_5937#0 TAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG 638 consensus_5937#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||