These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1621 fasta sequence [TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAATTGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTCGTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTACAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGGTTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGCTGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTTTCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGTTCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGTTTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCTATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAATTTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGGCTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGTTGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCTGGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACACTGGCTTTACGAACCGATTCTGCAAGGAGAAGCCAGTCAACCTCTCCACCTCTCCTTTCTCCACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGCAAAGGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGTGATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATCGATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTTCAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCTCCTCACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCTCAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATGGTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCATGGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATATATCTTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATTCATTTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGATCGC] [+] EMBL AK105489 [TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAATTGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTCGTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTACAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGGTTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGCTGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTTTCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGTTCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGTTTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCTATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAATTTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGGCTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGTTGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCTGGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACACTGGCTTTACGAACCGATTCTGCAAGGAGAAGCCAGTCAACCTCTCCACCTCTCCTTTCTCCACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGCAAAGGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGTGATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATCGATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTTCAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCTCCTCACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCTCAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATGGTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCATGGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATATATCTTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATTCATTTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGATCGC] consensusID : consensus_595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGACTTATATTATGGTTTAGCACTGGCTTTACGAACAAGTTCTGCAAGGAGAAATGCCCAGTACACCTCTCCACCTCATATCCTTTCTCTTCACTCCATCCAGTCCTACCTTCTCAA] [+] EMBL AA751224 [ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGACTTATATTATGGTTTAGCACTGGCTTTACGAACAAGTTCTGCAAGGAGAAATGCCCAGTACACCTCTCCACCTCATATCCTTTCTCTTCACTCCATCCAGTCCTACCTTCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_595#0 TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAAT 60 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTC 120 consensus_595#1 ------------------------------------------------------------ consensus_595#0 GTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTA 180 consensus_595#1 ------------------------------------------------------------ consensus_595#0 CAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGG 240 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGC 300 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTT 360 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGT 420 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGT 480 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCT 540 consensus_595#1 ------------------------------------------------------------ consensus_595#0 ATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAAT 600 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGG 660 consensus_595#1 ------------------------------------------------------------ consensus_595#0 CTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGT 720 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCT 780 consensus_595#1 ------------------------------------------------------------ consensus_595#0 GGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGA 840 consensus_595#1 --------------------------ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGA 34 **************************** **** consensus_595#0 AAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACAC 900 consensus_595#1 AAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGACTTATATTATGGTTTAGCAC 94 *************************************** ************** *** consensus_595#0 TGGCTTTACGAACCGATTCTGCAAGGAGAAG---CCAGTCAACCTCTCCACCTCTCCTTT 957 consensus_595#1 TGGCTTTACGAACAAGTTCTGCAAGGAGAAATGCCCAGTACACCTCTCCACCTCATATCC 154 ************* ************** ***** ************* * consensus_595#0 CTCCACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGC 1017 consensus_595#1 TTTCTCTTCACTCCATCCAGTCCTACCT-TCTCAA------------------------- 188 * * * * ** * * ** *** * consensus_595#0 AAAGGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGT 1077 consensus_595#1 ------------------------------------------------------------ consensus_595#0 GATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATC 1137 consensus_595#1 ------------------------------------------------------------ consensus_595#0 GATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTT 1197 consensus_595#1 ------------------------------------------------------------ consensus_595#0 CAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCT 1257 consensus_595#1 ------------------------------------------------------------ consensus_595#0 CCTCACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCT 1317 consensus_595#1 ------------------------------------------------------------ consensus_595#0 CAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATG 1377 consensus_595#1 ------------------------------------------------------------ consensus_595#0 GTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCAT 1437 consensus_595#1 ------------------------------------------------------------ consensus_595#0 GGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATAT 1497 consensus_595#1 ------------------------------------------------------------ consensus_595#0 ATCTTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATT 1557 consensus_595#1 ------------------------------------------------------------ consensus_595#0 CATTTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGA 1617 consensus_595#1 ------------------------------------------------------------ consensus_595#0 TCGC 1621 consensus_595#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||