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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1772 fasta sequence
[GATGCCCCATCCGCGCTCGCATCGCGCTGCATCCGCGCTCCGTCGCACGCGCGGCCCCTCCCCTTTCTCCGCCCTCCGTCGCGGCCGCCTTCCAACCCACGCTTCCCGCTCCCTTCGCCGCCGCCCCCACTGCTCGCGCGCCTCCGCCCCTCGCGCCGATCTCCTCCGCGGCGCCCCTCCGCCCATCGCAACGATCTACTCTGCGCCGCCCCCATCCCTCCCCTAACCATCGTCGACCCCCTCCCCTTCCAACCTCGCCGGCCATCCGCCCGTCGCTCCATGCCCGTCGGAGATCGCCGGCCGCCGGTTCCCCTAACCGCCGCAATCGACCCCATACCGGCGCCGCTGCACATCCTGATCACCGTCCAGTCGCCTTTCATCCCTCGGCCGGTCTCCGTCGCCTCGCCATCAGGAGCAAGAGGTTGAGGTGTCGAGCGCGGAGAGAGAGGCACCCAGGCTGACCTCGCTGGTGGCGACCTGGTGGTCTGTGTGACCTGCAAGTGTGGTGTCCACAAGGAGTTCGGCTTCGACCATTCCCACTGATCAAATTAGCCAGTCCCCTTATTCCATCCTCACTGTCAATGTCAATTTGTTCTTGCAACCGGACATCAGGCATAGAATGTTCCAACTATTGGGGAAGGTCAACGACAGGTTGAGTTTTGATCTAAGCATTACAAGATCCTTGCGTCTCACGAAGTAGCAGAATTACCTTTGCTGATCTTGCTGGTTCAATGAACTTGATCACGGGTTGGGACTTGGGAGTTGGCGACTGAGGCGCATGCAGGGCAGCGGCAATGACCAAGTGTTGGGCGCTCTATTAAGGACTGCAGGTTGTGGCAGTACTGCAGCAGCCAGTGCTTTGGTGGGGAGGTCATAATTGTTTTGTAGTATGGCTCTTACGGCTGTCCATTTCATGTTTATCCAATTTCAGCTCAAAATATTTATTTTTATGCCTATTTCGTGCTACATTTGTCCCTCTTTTAATTTTTAGATTTTACTAATCATCTTAGCTGTTCGCTTGATCTGGGAACAAGGGGATCTGTGTAATATAGGGAACGAGCAAGGGGACCTGTGTAACTGTGTTGGAGGTCGTGGGCTTCGATACAAAATTAATTGGGTTGCAGTTGGATTCATCATTGGATAAATGATCTGATTAATTAGTTGTATCAGTAATTGTTCCAAAGTACCTGCACATTTCTATGTTTTCTTTACTATTTCATCTCTGCAGAGTGGGAATTGAAAGATTGCAATTTAAGATATTTCATTTGTGTTTCAGGTCCTAATCTTTGCTTACATCTAAGAAATTTCTAATGAGAGGAAGATTCTCATTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGATCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACCTGGGCAATCAATTGAGGGAAATTAAAACTTGCGAGAGTTCCATTTTGAGTTAATAGAAAAAAAAGGATATTTTTTCTATTTAAATTGACATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATCTGATTGGCAGTATCACGCACGTAATGCTTATCGAGATTGTTGATCTTGCTTGATGAGAGCTTTTGATAACAAAGCTTTGCTGGGCATATTAATCACCAGACCAGTTTGATTGTTTCACGTTGGTGCTTGCGTCCTACCAGTATTATGTACTGAATAATGTTTCTTTGCTATGTCCTTCACTGATTTACTGATTTTGGTAAATTGAGGCTTCTACTGCGCTCGAT]
[+] EMBL AK109537 [GATGCCCCATCCGCGCTCGCATCGCGCTGCATCCGCGCTCCGTCGCACGCGCGGCCCCTCCCCTTTCTCCGCCCTCCGTCGCGGCCGCCTTCCAACCCACGCTTCCCGCTCCCTTCGCCGCCGCCCCCACTGCTCGCGCGCCTCCGCCCCTCGCGCCGATCTCCTCCGCGGCGCCCCTCCGCCCATCGCAACGATCTACTCTGCGCCGCCCCCATCCCTCCCCTAACCATCGTCGACCCCCTCCCCTTCCAACCTCGCCGGCCATCCGCCCGTCGCTCCATGCCCGTCGGAGATCGCCGGCCGCCGGTTCCCCTAACCGCCGCAATCGACCCCATACCGGCGCCGCTGCACATCCTGATCACCGTCCAGTCGCCTTTCATCCCTCGGCCGGTCTCCGTCGCCTCGCCATCAGGAGCAAGAGGTTGAGGTGTCGAGCGCGGAGAGAGAGGCACCCAGGCTGACCTCGCTGGTGGCGACCTGGTGGTCTGTGTGACCTGCAAGTGTGGTGTCCACAAGGAGTTCGGCTTCGACCATTCCCACTGATCAAATTAGCCAGTCCCCTTATTCCATCCTCACTGTCAATGTCAATTTGTTCTTGCAACCGGACATCAGGCATAGAATGTTCCAACTATTGGGGAAGGTCAACGACAGGTTGAGTTTTGATCTAAGCATTACAAGATCCTTGCGTCTCACGAAGTAGCAGAATTACCTTTGCTGATCTTGCTGGTTCAATGAACTTGATCACGGGTTGGGACTTGGGAGTTGGCGACTGAGGCGCATGCAGGGCAGCGGCAATGACCAAGTGTTGGGCGCTCTATTAAGGACTGCAGGTTGTGGCAGTACTGCAGCAGCCAGTGCTTTGGTGGGGAGGTCATAATTGTTTTGTAGTATGGCTCTTACGGCTGTCCATTTCATGTTTATCCAATTTCAGCTCAAAATATTTATTTTTATGCCTATTTCGTGCTACATTTGTCCCTCTTTTAATTTTTAGATTTTACTAATCATCTTAGCTGTTCGCTTGATCTGGGAACAAGGGGATCTGTGTAATATAGGGAACGAGCAAGGGGACCTGTGTAACTGTGTTGGAGGTCGTGGGCTTCGATACAAAATTAATTGGGTTGCAGTTGGATTCATCATTGGATAAATGATCTGATTAATTAGTTGTATCAGTAATTGTTCCAAAGTACCTGCACATTTCTATGTTTTCTTTACTATTTCATCTCTGCAGAGTGGGAATTGAAAGATTGCAATTTAAGATATTTCATTTGTGTTTCAGGTCCTAATCTTTGCTTACATCTAAGAAATTTCTAATGAGAGGAAGATTCTCATTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGATCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACCTGGGCAATCAATTGAGGGAAATTAAAACTTGCGAGAGTTCCATTTTGAGTTAATAGAAAAAAAAGGATATTTTTTCTATTTAAATTGACATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATCTGATTGGCAGTATCACGCACGTAATGCTTATCGAGATTGTTGATCTTGCTTGATGAGAGCTTTTGATAACAAAGCTTTGCTGGGCATATTAATCACCAGACCAGTTTGATTGTTTCACGTTGGTGCTTGCGTCCTACCAGTATTATGTACTGAATAATGTTTCTTTGCTATGTCCTTCACTGATTTACTGATTTTGGTAAATTGAGGCTTCTACTGCGCTCGAT]
[+] EMBL AK108485 [ CCGTCGCACGCGCGGCCCCTCCCCTTTCTCCGCCCTCCGTCGCGGCCGCCTTCCAACCCACGCTTCCCGCTCCCTTCGCCGCCGCCCCCACTGCTCGCGCGCCTCCGCCCCTCGCGCCGATCTCCTCCGCGGCGCCCCTCCGCCCATCGCAACGATCTACTCTGCGCCGCCCCCATCCCTCCCCTAACCATCGTCGACCCCCTCCCCTTCCAACCTCGCCGGCCATCCGCCCGTCGCTCCATGCCCGTCGGAGATCGCCGGCCGCCGGTTCCCCTAACCGCCGCAATCGACCCCATACTGGCGCCGCTGCACATCCTGATCACCGTCCAGTCGCCTTTCATCCCTCGGCCGGTCTCCGTCGCCTCGCCATCAGGAGCAAGAGGTTGAGGTGTCGAGCGCGGAGAGAGAGGCACCCAGGCTGACCTCGCTGGTGGCGACCTGGTGGTCTGTGTGACCTGCAAGTGTGGTGTCCACAAGGAGTTCGGCTTCGACCATTCCCACTGATCAAATTAGCCAGTCCCCTTATTCCATCCTCACTGTCAATGTCAATTTGTTCTTGCAACCGGACATCAGGCATAGAATGTTCCAACTATTGAGGAAGGTCAACGACAGGTTGAGTTTTGATCTAAGCATTACAAGATCCTTGCGTCTCACGAAGTAGCAGAATTACCTTTGCTGATCTTGCTGGTTCAGTGAACTTGATCACGGGTTGGGACTTGGGAGTTGGCGACTGAGGCGCATGCAGGGCAGCGGCAATGACCAAGTGTTGGGCGCTCTATTAAGGACTGCAGGTTGTGGCAGTACTGCAGCAGCCAGTGCTTTGGTGGGGAGGTCATAATTGTTTTGTAGTATGGCTCTTACGGCTGTCCATTTCATGTTTATCCAATTTCAGCTCAAAATATTTATTTTTATGCCTATTTCGTGCTACATTTGTCCCTCTTTTAATTTTTAGATTTTACTAATCATCTTAGCTGTTCGCTTGATCTGGGAACAAGGGGATCTGTGTAATATAGGGAACGAGCAAGGGGACCTGTGTAACTGTGTTGGAGGTCGTGGGCTTCGATACAAAATTAATTGGGTTGCAGTTGGATTCATCATTGGATAAATGATCTGATT ]
consensusID : consensus_5976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[TAATGAGAGGAAGATTCTCATTTCAGGTCCTCATCCTGTTATTCACCCTTCATGCCAATTCATGCCAAGTTGGTTTACAATGCTTACCTGATCAAATTTGCCCATGTTCAGTAAGGGACCAATATGAATGCATCATGTTGGTCAAATATACTTAGGTAACTGAATTTTTGTGGTTTTCTTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGATCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACTTGGGCAATCAATTGAGGGAAATTAAAACTTGCGAGGGTTCCATTTTGAGTTAATAGAAAAAAAGGGATATTTTTTCTATTTAAATTGCCATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATTTGATTGGCAGTATCACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF304387 [TAATGAGAGGAAGATTCTCATTTCAGGTCCTCATCCTGTTATTCACCCTTCATGCCAATTCATGCCAAGTTGGTTTACAATGCTTACCTGATCAAATTTGCCCATGTTCAGTAAGGGACCAATATGAATGCATCATGTTGGTCAAATATACTTAGGTAACTGAATTTTTGTGGTTTTCTTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGATCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACTTGGGCAATCAATTGAGGGAAATTAAAACTTGCGAGGGTTCCATTTTGAGTTAATAGAAAAAAAGGGATATTTTTTCTATTTAAATTGCCATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATTTGATTGGCAGTATCACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5976#0 GATGCCCCATCCGCGCTCGCATCGCGCTGCATCCGCGCTCCGTCGCACGCGCGGCCCCTC 60
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 CCCTTTCTCCGCCCTCCGTCGCGGCCGCCTTCCAACCCACGCTTCCCGCTCCCTTCGCCG 120
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 CCGCCCCCACTGCTCGCGCGCCTCCGCCCCTCGCGCCGATCTCCTCCGCGGCGCCCCTCC 180
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GCCCATCGCAACGATCTACTCTGCGCCGCCCCCATCCCTCCCCTAACCATCGTCGACCCC 240
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 CTCCCCTTCCAACCTCGCCGGCCATCCGCCCGTCGCTCCATGCCCGTCGGAGATCGCCGG 300
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 CCGCCGGTTCCCCTAACCGCCGCAATCGACCCCATACCGGCGCCGCTGCACATCCTGATC 360
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 ACCGTCCAGTCGCCTTTCATCCCTCGGCCGGTCTCCGTCGCCTCGCCATCAGGAGCAAGA 420
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GGTTGAGGTGTCGAGCGCGGAGAGAGAGGCACCCAGGCTGACCTCGCTGGTGGCGACCTG 480
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GTGGTCTGTGTGACCTGCAAGTGTGGTGTCCACAAGGAGTTCGGCTTCGACCATTCCCAC 540
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TGATCAAATTAGCCAGTCCCCTTATTCCATCCTCACTGTCAATGTCAATTTGTTCTTGCA 600
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 ACCGGACATCAGGCATAGAATGTTCCAACTATTGGGGAAGGTCAACGACAGGTTGAGTTT 660
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TGATCTAAGCATTACAAGATCCTTGCGTCTCACGAAGTAGCAGAATTACCTTTGCTGATC 720
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TTGCTGGTTCAATGAACTTGATCACGGGTTGGGACTTGGGAGTTGGCGACTGAGGCGCAT 780
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GCAGGGCAGCGGCAATGACCAAGTGTTGGGCGCTCTATTAAGGACTGCAGGTTGTGGCAG 840
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TACTGCAGCAGCCAGTGCTTTGGTGGGGAGGTCATAATTGTTTTGTAGTATGGCTCTTAC 900
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GGCTGTCCATTTCATGTTTATCCAATTTCAGCTCAAAATATTTATTTTTATGCCTATTTC 960
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GTGCTACATTTGTCCCTCTTTTAATTTTTAGATTTTACTAATCATCTTAGCTGTTCGCTT 1020
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 GATCTGGGAACAAGGGGATCTGTGTAATATAGGGAACGAGCAAGGGGACCTGTGTAACTG 1080
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TGTTGGAGGTCGTGGGCTTCGATACAAAATTAATTGGGTTGCAGTTGGATTCATCATTGG 1140
consensus_5976#1 -----------------------------------------------------TAATGAG 7
* ** *
consensus_5976#0 ATAAATGATCTGATTAATTAGTTGTATCA-GTAATTGTTCCAAAGTACCTGCACATTTCT 1199
consensus_5976#1 AGGAAGATTCTCATTTCAGGTCCTCATCCTGTTATTCACCCTTCATGCCAATTCATGCCA 67
* ** *** *** *** ** *** ** * ** *** *
consensus_5976#0 ATGTTTTCTTTACTATTTCATCTCTGCAGAGTGGGAATTGAAAGATTGCAATTTAAGATA 1259
consensus_5976#1 AGTTGGTTTACAATGCTT-ACCTGATCAAATTTGCCCATGTTCAGTAAGGGACCAATATG 126
* * * * * * ** * ** ** * * * ** * ** **
consensus_5976#0 TTTCATTTGTGTTTCAGGTCCTAATCTTTGCTTACATCTAAGAAATTTCTAATGAGAGGA 1319
consensus_5976#1 AATGCATCATGTT---GGTCAAA---TATACTTAGG--TAACTGAATTTTTGTGG----- 173
* * **** **** * * * **** *** * ** * **
consensus_5976#0 AGATTCTCATTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGA 1379
consensus_5976#1 ----TTTTCTTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGA 229
* * ***************************************************
consensus_5976#0 TCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACCTGGGCAATCAATTGAGGGAAATTAAA 1439
consensus_5976#1 TCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACTTGGGCAATCAATTGAGGGAAATTAAA 289
********************************* **************************
consensus_5976#0 ACTTGCGAGAGTTCCATTTTGAGTTAATAGAAAAAAAAGGATATTTTTTCTATTTAAATT 1499
consensus_5976#1 ACTTGCGAGGGTTCCATTTTGAGTTAATAGAAAAAAAGGGATATTTTTTCTATTTAAATT 349
********* *************************** **********************
consensus_5976#0 GACATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATCTGATTGGCAGT 1559
consensus_5976#1 GCCATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATTTGATTGGCAGT 409
* ********************************************** ***********
consensus_5976#0 ATCACGCACGTAATGCTTATCGAGATTGTTGATCTTGCTTGATGAGAGCTTTTGATAACA 1619
consensus_5976#1 ATCACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 448
******** ** * * * *
consensus_5976#0 AAGCTTTGCTGGGCATATTAATCACCAGACCAGTTTGATTGTTTCACGTTGGTGCTTGCG 1679
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TCCTACCAGTATTATGTACTGAATAATGTTTCTTTGCTATGTCCTTCACTGATTTACTGA 1739
consensus_5976#1 ------------------------------------------------------------
consensus_5976#0 TTTTGGTAAATTGAGGCTTCTACTGCGCTCGAT 1772
consensus_5976#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||