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Oryza sativa
cluster # 5983 cluster # 5983       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5983#0 length = 2313 sequences # 3  

consensusID : consensus_5983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2313
fasta sequence
                              [CCGCGTCACCACTACTCCCCTCTCCTCTTCACAAGCGATGGCGGCGGCGACTCCGGCGAGCGGCGGCGGCGGCGGCGGGTACTCGTGCGAGACGGCGGAGCAGACCCGCGAGTGGATGGAGGCCATCTCCGCCTTTCTCCACCTCCACCGCCCGCTCCTCGAGGCGCACGTCGTCAACTTCTTCAAGGATCGGCTGTGGGAGATGGTGGATGCGGAGTGGATGGAGTGCCTCCGCAGGGAGCCCGTGGAGAGCTTGCTCATGTTGCCCTCCGGGTGTGTTCAGGAGCACTGGCCCAGTTCATTGCGAGATTTTGTACTCACTGCAAAGTCACTTGTTCTTCCACGGGAGCAGAAGTCACCGCGATCACTCCTACCCGACTTGCATGTAGCATCAATTAATACTGTTCTCGCTCAAGGAATGAACTCCAAGAAGAAGCATGAAATTGAAACTCTAGCTGGGTTGGTTCATGCAATTACCAAGAGCTGTGGAGCAAAGACAGTGATTGATGTAGGTTCTGGCCAGGGTTATCTTGCCCAAGCCTTATCTTTTGAGTACCAACTCCCTGTTGTAGCAATAGATGCTTCATCACATCATGCATCAGTTACAAATACTCGTGCAGAAAGAATAAAGAAGTACTACACTGCTAAATGTGTAGGGAAGCAACAGCTCAGAGTACCTAGAACTGTTACTTGCCATGTACTTTCTAGTGACACATTAGCAGCTGTGACATTGGAAGCATGTCAGGATGATCATGCTGAACATATACCAGAAAGTAAAAACTTCAACGAGAGCAGTCCACAAATTGAGAAACCAAATGACAGCATTCCTCCATTAGTCCTTGCTGGTCTTCATGCTTGTGGTGATCTTTCAGTTAACATGCTAAGGCTTTTTGTGTCGTGCGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATGCCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAATTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAGTCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCAAATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCAAGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGCAGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCCACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTCAACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCTTGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCTTGGCTGTGATTT-TGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATCTTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGCAGGCTGCGATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGTAAGCTTGTGTTTGATATATGTGAAATCATTTGGAGAAGTCAGCACAGCAGGGTTTGGCTGAGAGAGACAAATAAGATTTGCTGTAAGCTGCCTAATTAAAAAAAAAA]

[+] EMBL AK106471             [CCGCGTCACCACTACTCCCCTCTCCTCTTCACAAGCGATGGCGGCGGCGACTCCGGCGAGCGGCGGCGGCGGCGGCGGGTACTCGTGCGAGACGGCGGAGCAGACCCGCGAGTGGATGGAGGCCATCTCCGCCTTTCTCCACCTCCACCGCCCGCTCCTCGAGGCGCACGTCGTCAACTTCTTCAAGGATCGGCTGTGGGAGATGGTGGATGCGGAGTGGATGGAGTGCCTCCGCAGGGAGCCCGTGGAGAGCTTGCTCATGTTGCCCTCCGGGTGTGTTCAGGAGCACTGGCCCAGTTCATTGCGAGATTTTGTACTCACTGCAAAGTCACTTGTTCTTCCACGGGAGCAGAAGTCACCGCGATCACTCCTACCCGACTTGCATGTAGCATCAATTAATACTGTTCTCGCTCAAGGAATGAACTCCAAGAAGAAGCATGAAATTGAAACTCTAGCTGGGTTGGTTCATGCAATTACCAAGAGCTGTGGAGCAAAGACAGTGATTGATGTAGGTTCTGGCCAGGGTTATCTTGCCCAAGCCTTATCTTTTGAGTACCAACTCCCTGTTGTAGCAATAGATGCTTCATCACATCATGCATCAGTTACAAATACTCGTGCAGAAAGAATAAAGAAGTACTACACTGCTAAATGTGTAGGGAAGCAACAGCTCAGAGTACCTAGAACTGTTACTTGCCATGTACTTTCTAGTGACACATTAGCAGCTGTGACATTGGAAGCATGTCAGGATGATCATGCTGAACATATACCAGAAAGTAAAAACTTCAACGAGAGCAGTCCACAAATTGAGAAACCAAATGACAGCATTCCTCCATTAGTCCTTGCTGGTCTTCATGCTTGTGGTGATCTTTCAGTTAACATGCTAAGGCTTTTTGTGTCGTGCGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATGCCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAATTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAGTCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCAAATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCAAGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGCAGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCCACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTCAACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCTTGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCTTGGCTGTGATTT TGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATCTTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGCAGGCTGCGATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCT                                                                                                                            ]
[+] EMBL CB644304             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCAGTTAACATGCTAAGGCTTTTTGTGTCGTGCGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATGCCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAATTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAGTCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCAAATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCAAGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGCAGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCCACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTCAACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCTTGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCTTGGCTGTGATTT TGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGGTATTGAAGCATCTTTGTTTTCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB644305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTAGGTCGCCTTGGCTGTGATTTGTG GGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATCTTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGCAGGCTGCAATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGTAAGCTTGTGTTTGATATATGTGAAATCATTTGGAGAAGTCAGCACAGCAGGGTTTGGCTGAGAGAGACAAATAAGATTTGCTGTAAGCTGCCTAATTAAAAAAAAAA]


>consensus_5983#0 CCGCGTCACCACTACTCCCCTCTCCTCTTCACAAGCGATGGCGGCGGCGACTCCGGCGAG CGGCGGCGGCGGCGGCGGGTACTCGTGCGAGACGGCGGAGCAGACCCGCGAGTGGATGGA GGCCATCTCCGCCTTTCTCCACCTCCACCGCCCGCTCCTCGAGGCGCACGTCGTCAACTT CTTCAAGGATCGGCTGTGGGAGATGGTGGATGCGGAGTGGATGGAGTGCCTCCGCAGGGA GCCCGTGGAGAGCTTGCTCATGTTGCCCTCCGGGTGTGTTCAGGAGCACTGGCCCAGTTC ATTGCGAGATTTTGTACTCACTGCAAAGTCACTTGTTCTTCCACGGGAGCAGAAGTCACC GCGATCACTCCTACCCGACTTGCATGTAGCATCAATTAATACTGTTCTCGCTCAAGGAAT GAACTCCAAGAAGAAGCATGAAATTGAAACTCTAGCTGGGTTGGTTCATGCAATTACCAA GAGCTGTGGAGCAAAGACAGTGATTGATGTAGGTTCTGGCCAGGGTTATCTTGCCCAAGC CTTATCTTTTGAGTACCAACTCCCTGTTGTAGCAATAGATGCTTCATCACATCATGCATC AGTTACAAATACTCGTGCAGAAAGAATAAAGAAGTACTACACTGCTAAATGTGTAGGGAA GCAACAGCTCAGAGTACCTAGAACTGTTACTTGCCATGTACTTTCTAGTGACACATTAGC AGCTGTGACATTGGAAGCATGTCAGGATGATCATGCTGAACATATACCAGAAAGTAAAAA CTTCAACGAGAGCAGTCCACAAATTGAGAAACCAAATGACAGCATTCCTCCATTAGTCCT TGCTGGTCTTCATGCTTGTGGTGATCTTTCAGTTAACATGCTAAGGCTTTTTGTGTCGTG CGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATG CCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAA TTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAG TCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCA AATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCA AGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGC AGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCC ACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTC AACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCT TGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCT TGGCTGTGATTTTGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTT CACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAAC ATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATC TTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAA GTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACAC TGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGT GCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCAT GGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGC AGGCTGCGATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACG AGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAG ATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGA ATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGTAAGCTTGTGTTTGA TATATGTGAAATCATTTGGAGAAGTCAGCACAGCAGGGTTTGGCTGAGAGAGACAAATAA GATTTGCTGTAAGCTGCCTAATTAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)