cluster # 5984

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Oryza sativa
cluster # 5984 cluster # 5984 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5984#0 length = 707 sequences # 3

consensusID : consensus_5984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 707
fasta sequence

                              [GCCTCGACGTCCATATTATATTACAGTTCTGACAGTATATAGTGGAGCT-ACCTGGAGTACCGTCCAAGTTGGTCCCAATCATGCAAT-AAATACAGAGAAGAAAGAGCTGTATAATCAAAGTACACTTTATACTCCACTACAAGAGAAGAAGAAGAAGAAGGAATGAAGGGAAACGACTATATATATTGTATGTATTTAATTACTCCTGCAAATATATGGATATTGTTTCCCTTCAAGAAAAGAAAAGAAAGAAAGAAAATATATATATTTAATTTATATGGTAGAATATATTGCTCATCCTAAAATAGGGCAGCATCTTCTTAATTCTTCTTCTTCATGCAGGGCAGTCGAT-CGTTATTGCGAGTTCTTGTTTAATTTACCGGCCATTAATTAACTAACTTGCTTCTCTTGTCTCTGCTGTGCACTGCTGATCAGTATAATACGTACATGTCGCGTATAGTGCTGGAGTAGTAG-CGTGTGACATGCAGCTCGGTGCTACTCGCCGTCGCCGGCGGCGGCGGCGGCGGCGCTCCGGCGCCAGATGTCTTCGAGCTCGGTGGCGAAGAGCTTCTCCTGGCCGACGATGATGGTGATGTGGTCCTTGTGGTCGTAGACGGTGACGCGCG-CCCGGGGCACCCTGGCGCCGACGGCNAGGGTGCACTCGACGGGGAAGGAGCTCGTCGTCGCGGCCGNGGAAGACGGCAACC]

[+] EMBL CB655601             [GCCTCGACGTCCATATTATATTACAGTTCTGACAGTATATAGTGGAGCT ACCTGGAGTACCGTCCAAGTTGGTCCCAATCATGCAAT AAATACAGAGAAGAAAGAGCTGTATAATCAAAGTACACTTTATACTCCACTACAAGAGAAGAAGAAGAAGAAGGAATGAAGGGAAACGACTATATATATTGTATGTATTTAATTACTCCTGCAAATATATGGATATTGTTTCCCTTCAAGAAAAGAAAAGAAAGAAAGAAAATATATATATTTAATTTATATGGTAGAATATATTGCTCATCCTAAAATAGGGCAGCATCTTCTTAATTCTTCTTCTTCATGCAGGGCAGTCGAT CGTTATTGCGAGTTCTTGTTTAATTTACCGGCCATTAATTAACTAACTTGCTTCTCTTGTCTCTGCTGTGCACTGCTGATCAGTATAATACGTACATGTCGCGTATAGTGCTGGAGTAGTAG CGTGTGACATGCAGCTCGGTGCTACTCGCCGTCGCCGGCGGCGGCGGCGGCGGCGCTCCGGCGCCAGATGTCTTCGAGCTCGGTGGCGAAGAGCTTCTCCTGGCCGACGATGATGGTGATGTGGTCCTTGTGGTCGTAGACGGTGACGCGCG CCCGGGGCACCCTGGC                                                                 ]
[-] EMBL AU225182             [                                        AGTGGAGCTAACCTGGAGTACCGTCCAAGTTGGTCCC ATCATGCAATAAAATACAGAGAAGAAAGAGCTGTATAATCAAAGTACACTTTATACTCCACTACAAGAGAAGAAGAAGAAGAAGGAATGAAGGGAAACGAC  TATATATTGTATGTATTTAATTACTCCTGCAAATATATGGATATTGTTTCCCTTCAAGAAAAGAAAAGAAAGAAAGAAAATATATATATTTAATTTATATGGTAGAATATATTGCTCATCCTAAAATAGGGCAGCATCTTCTTAATTCTTCTTCTTCATGCAGGGCAGTCGAT CGTTATTGCGAGTTCTTGTTTAATTTACCGGCCATTAATTAAgcggc                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AU182590             [                                                                                                                                                                                                                                                                          tttTTTAATTTATATGGTAGAATATATTGCTCATCCTAAAATAGGGCAGCATCTTCTTAATTCTTCTTCTTCATGCAGGGCAGTCGATCCGTTATTGCGAGTTCTTGTTTAATTTACCGGCCATTAATTAACTAACTTGCTTCTCTTGTCTCTGCTGTGCACTGCTGATCAGTATAATACGTACATGTCGCGTATAGTGCTGGAGTAGTAGCCGTGTGACATGCAGCTCGGTGCTACTCGCCGTCGCCGGCGGCGGCGGCGGCGGCGCTCCGGCGCCAGATGTCTTCGAGCTCGGTGGCGAAGAGCTTCTCCTGGCCGACGATGATGGTGATGTGGTCCTTGTGGTCGTAGACGGNGACGCGCGCCCCGGGGCACCCTGGCGCCGACGGCNAGGGTGCACTCGACGGGGAAGGAGCTCGTCGTCGCGGCCGNGGAAGACGGCAACC]




>consensus_5984#0
GCCTCGACGTCCATATTATATTACAGTTCTGACAGTATATAGTGGAGCTACCTGGAGTAC
CGTCCAAGTTGGTCCCAATCATGCAATAAATACAGAGAAGAAAGAGCTGTATAATCAAAG
TACACTTTATACTCCACTACAAGAGAAGAAGAAGAAGAAGGAATGAAGGGAAACGACTAT
ATATATTGTATGTATTTAATTACTCCTGCAAATATATGGATATTGTTTCCCTTCAAGAAA
AGAAAAGAAAGAAAGAAAATATATATATTTAATTTATATGGTAGAATATATTGCTCATCC
TAAAATAGGGCAGCATCTTCTTAATTCTTCTTCTTCATGCAGGGCAGTCGATCGTTATTG
CGAGTTCTTGTTTAATTTACCGGCCATTAATTAACTAACTTGCTTCTCTTGTCTCTGCTG
TGCACTGCTGATCAGTATAATACGTACATGTCGCGTATAGTGCTGGAGTAGTAGCGTGTG
ACATGCAGCTCGGTGCTACTCGCCGTCGCCGGCGGCGGCGGCGGCGGCGCTCCGGCGCCA
GATGTCTTCGAGCTCGGTGGCGAAGAGCTTCTCCTGGCCGACGATGATGGTGATGTGGTC
CTTGTGGTCGTAGACGGTGACGCGCGCCCGGGGCACCCTGGCGCCGACGGCNAGGGTGCA
CTCGACGGGGAAGGAGCTCGTCGTCGCGGCCGNGGAAGACGGCAACC

clustalw multiple alignements is not computed in this case