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Oryza sativa
cluster # 6009 cluster # 6009       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6009#0 length = 1801 sequences # 3  

consensusID : consensus_6009#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1801
fasta sequence
                              [GCCGCCGCCATCTCCGGCAACTTCGACTTCCTGCCCCCCAAAGACGAGTACGACCAGTACAGGCACCACCAGGTCGAGGGCCACTGCAACGGGCTCCTCTTGATCAGGTTCCGCGATCTCGTGGTCAACCCCGCCACGCGATGGTGGGATCGCTTGCCCCCGCGCCCGCTGCCGCGCGACGAGATGGACCGCATCGACGCCGCCTACCTCGTCTTCGATCCCGCAGTGTCCCCGCGGCACTACGAGGTGTTCTTGACCCCATCGTTCCGCTGGAAAAGCGAATCGGAGAAAGCCGAATTGGACCCCATGGTGGAGGCATCGGAATGGCCACCGGAATCATACACACTGCCCGTCTTCTCGTCGAGGACAGGGCTGTGGCAAGAGAGGAGTTTCATCCGTCAGGGACAAGCCGCAGGCACCATCGCCGACATGCGATCGGATTGGGCATCGGACCAAAGGAATGGTGTCTATTGGCGAGGAGCATTGTACGTTCATTGTCAGACTAATTTTGTTATCAGAATATCGTTGAATGATGACAAGTACCAAGTAATTAAACCACCAGAGTACTCCGGCCGCTACCTCAACTTTTATCTTGGGAGGTCAGAGAAGGGTGTATACCTTGCATTATCCAGAGACAACTGTCTTAAAGTTTGGATTCTTGATGAAACATGTAGCAAAATGAAGTGGGAGCTCAAGCATGACAAGCACATCAGACATATTCTGCTTGGGCGCAATAATCGACAAGGTCTCGGCCCATGGATTTTACAGGATATCAACCACCAAAAGAATCCTTATATATATGAATATGATGAAATCATTGAAGCACCCAACCAGAAGAAGGTTGAATGTGAACAAGCAGCATTGGAGAAGTTTGAATGGATCTCAGACGATGAAAATGTTCTTGACAATGAAGATATAGTTACAGGAGGATATCATGAATACATTAATATCATTGGGTTTCATCCATACAAAGAGATAATATTTTTAGACGAATCGTTAAAGAGAGGGCTAGCCTATCATTTAAGCAGCTCAAAGGTTGAAGATATAGGTAACTTATATCCAACCAACCTTGAATATGAATTAATTAATGAGCAGTTTATAACCGCTTCTTTTCCATATACACCCTGCTTCATGTGAGGGTTTCTAGAGAAGCTTAAACATCGAAATAAATGACTGTACTCATGTATTCAAATATGTACCTATGAGGATTTGCTCCTCTTTATTAAGAGATATTTTTCAGTTCCTATTCAAATTTTGCTTTTGCTTTCGGTGTGTGCTAGTTGTATTCTAAATCTTTGAAAGGGTGCTCTAGTATCCATCCTATTAGCTACGTTGCTATACATGCATATGGTAATTTCTACTCGTACCTCTGCTTGAATCTCTCTACTATTGATACATGGCATTACCAACTCTTGTCATATTGTGTATCTTTGATTAACATTGGCATGGATAAGGATAACTCAGTCTTACCTTGCTACTATTGCAGAAACACTGCAGCGTAGAGAGCATGTCTGAATGAGTGAAGGGGAAAAAAAAGACGGTACAAGGAAATAAGGGCTCCTTTGAAATTCATTAATTTTATAATATTTGTACGTAAATTTGTTCGTTTTTTAGAAACTTCTTTGAAAATCCTTCAATCCAGAGAGGTCCGAGTCTCTTCTGAATTCTGAAGGAAAGAAGCATCATGCTGCTCTTTTTTGTTAAGGACTACAAAAATTCCCATGCATTACAGTAGGTGAAGGCTAAATGTATATTTGTTGCCAAAACTTGTTCCTGGTATAATGATATTAGCTCTTAAACT]

[+] EMBL AK111705             [GCCGCCGCCATCTCCGGCAACTTCGACTTCCTGCCCCCCAAAGACGAGTACGACCAGTACAGGCACCACCAGGTCGAGGGCCACTGCAACGGGCTCCTCTTGATCAGGTTCCGCGATCTCGTGGTCAACCCCGCCACGCGATGGTGGGATCGCTTGCCCCCGCGCCCGCTGCCGCGCGACGAGATGGACCGCATCGACGCCGCCTACCTCGTCTTCGATCCCGCAGTGTCCCCGCGGCACTACGAGGTGTTCTTGACCCCATCGTTCCGCTGGAAAAGCGAATCGGAGAAAGCCGAATTGGACCCCATGGTGGAGGCATCGGAATGGCCACCGGAATCATACACACTGCCCGTCTTCTCGTCGAGGACAGGGCTGTGGCAAGAGAGGAGTTTCATCCGTCAGGGACAAGCCGCAGGCACCATCGCCGACATGCGATCGGATTGGGCATCGGACCAAAGGAATGGTGTCTATTGGCGAGGAGCATTGTACGTTCATTGTCAGACTAATTTTGTTATCAGAATATCGTTGAATGATGACAAGTACCAAGTAATTAAACCACCAGAGTACTCCGGCCGCTACCTCAACTTTTATCTTGGGAGGTCAGAGAAGGGTGTATACCTTGCATTATCCAGAGACAACTGTCTTAAAGTTTGGATTCTTGATGAAACATGTAGCAAAATGAAGTGGGAGCTCAAGCATGACAAGCACATCAGACATATTCTGCTTGGGCGCAATAATCGACAAGGTCTCGGCCCATGGATTTTACAGGATATCAACCACCAAAAGAATCCTTATATATATGAATATGATGAAATCATTGAAGCACCCAACCAGAAGAAGGTTGAATGTGAACAAGCAGCATTGGAGAAGTTTGAATGGATCTCAGACGATGAAAATGTTCTTGACAATGAAGATATAGTTACAGGAGGATATCATGAATACATTAATATCATTGGGTTTCATCCATACAAAGAGATAATATTTTTAGACGAATCGTTAAAGAGAGGGCTAGCCTATCATTTAAGCAGCTCAAAGGTTGAAGATATAGGTAACTTATATCCAACCAACCTTGAATATGAATTAATTAATGAGCAGTTTATAACCGCTTCTTTTCCATATACACCCTGCTTCATGTGAGGGTTTCTAGAGAAGCTTAAACATCGAAATAAATGACTGTACTCATGTATTCAAATATGTACCTATGAGGATTTGCTCCTCTTTATTAAGAGATATTTTTCAGTTCCTATTCAAATTTTGCTTTTGCTTTCGGTGTGTGCTAGTTGTATTCTAAATCTTTGAAAGGGTGCTCTAGTATCCATCCTATTAGCTACGTTGCTATACATGCATATGGTAATTTCTACTCGTACCTCTGCTTGAATCTCTCTACTATTGATACATGGCATTACCAACTCTTGTCATATTGTGTATCTTTGATTAACATTGGCATGGATAAGGATAACTCAGTCTTACCTTGCTACTATTGCAGAAACACTGCAGCGTAGAGAGCATGTCTGAATGAGTGAAGGGGAAAAAAAAGACGGTACAAGGAAATAAGGGCTCCTTTGAAATTCATTAATTTTATAATATTTGTACGTAAATTTGTTCGTTTTTTAGAAACTTCTTTGAAAATCCTTCAATCCAGAGAGGTCCGAGTCTCTTCTGAATTCTGAAGGAAAGAAGCATCATGCTGCTCTTTTTTGTTAAGGACTACAAAAATTCCCATGCATTACAGTAGGTGAAGGCTAAATGTATATTTGTTGCCAAAACTTGTTCCTGGTATAATGATATTAGCTCTTAAACT]
[+] EMBL AK111783             [GCCGCCGCCATCTCCGGCAACTTCGACTTCCTGCCCCCCAAAGACGAGTACGACCAGTACAGGCACCACCAGGTCGAGGGCCACTGCAACGGGCTCCTCTTGATCAGGTTCCGCGATCTCGTGGTCAACCCCGCCACGCGATGGTGGGATCGCTTGCCCCCGCGCCCGCTGCCGCGCGACGAGATGGACCGCATCGACGCCGCCTACCTCGTCTTCGATCCCGCAGTGTCCCCGCGGCACTACGAGGTGTTCTTGACCCCATCGTTCCGCTGGAAAAGCGAATCGGAGAAAGCCGAATTGGACCCCATGGTGGAGGCATCGGAATGGCCACCGGAATCATACACACTGCCCGTCTTCTCGTCGAGGACAGGGCTGTGGCAAGAGAGGAGTTTCATCCGTCAGGGACAAGCCGCAGGCACCATCGCCGACATGCGATCGGATTGGGCATCGGACCAAAGGAATGGTGTCTATTGGCGAGGAGCATTGTACGTTCATTGTCAGACTAATTTTGTTATCAGAATATCGTTGAATGATGACAAGTACCAAGTAATTAAACCACCAGAGTACTCCGGCCGCTACCTCAACTTTTATCTTGGGAGGTCAGAGAAGGGTGTATACCTTGCATTATCCAGAGACAACTGTCTTAAAGTTTGGATTCTTGATGAAACATGTAGCAAAATGAAGTGGGAGCTCAAGCATGACAAGCACATCAGACATATTCTGCTTGGGCGCAATAATCGACAAGGTCTCGGCCCATGGATTTTACAGGATATCAACCACCAAAAGAATCCTTATATATATGAATATGATGAAATCATTGAAGCACCCAACCAGAAGAAGGTTGAATGTGAACAAGCAGCATTGGAGAAGTTTGAATGGATCTCAGACGATGAAAATGTTCTTGACAATGAAGATATAGTTACAGGAGGATATCATGAATACATTAATATCATTGGGTTTCATCCATACAAAGAGATAATATTTTTAGACGAATCGTTAAAGAGAGGGCTAGCCTATCATTTAAGCAGCTCAAAGGTTGAAGATATAGGTAACTTATATCCAACCAACCTTGAATATGAATTAATTAATGAGCAGTTTATAACCGCTTCTTTTCCATATACACCCTGCTTCATGTGAGGGTTTCTAGAGAAGCTTAAACATCGAAATAAATGACTGTACTCATGTATTCAAATATGTACCTATGAGGATTTGCTCCTCTTTATTAAGAGATATTTTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CA762760             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCTTGGGAGGTCAGAGAAGGGTGTATACCTTGCATTATCCAGAGACAACTGTCTTAAAGTTTGGATTCTTGATGAAACATGTAGCAAAATGAAGTGGGAGCTCAAGCATGACAAGCACATCAGACATATTCTGCTTGGGCGCAATAATCGACAAGGTCTCGGCCCATGGATTTTACAGGATATCAACCACCAAAAGAATCCTTATATATATGAATATGATGAAATCATTGAAGCACCCAACCAGAAGAAGGTTGAATGTGAACAAGCAGCATTGGAGAAGTTTGAATGGATCTCAGACGATGAAAATGTTCTTGACAATGAAGATATAGTTACAGGAGGATATCATGAATACATTAATATCATTGGGTTTCATCCATACAAAGAGATAATATTTTTAGACGAATCGTTAAAGAGAGGGCTAGCCTATCATTTAAGCAGCTCAAAGGTTGAAGATATAGGTAACTTATATCCAACCAACCTTGAATATGAATTAATTAATGAGCAGTTTATAACCGCTTCTTTTCCATATACACCCTGCTTCATGTGAGGGTTTCTAGAGAAGCTTAAACATCGAAATAAATGACTGTACTCATGTATTCAAATATGTACCTATGAGGATTTGCTCCTCTTTATTAAGAGATATTTTTCAGTTCCTATTCAAAaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_6009#0 GCCGCCGCCATCTCCGGCAACTTCGACTTCCTGCCCCCCAAAGACGAGTACGACCAGTAC AGGCACCACCAGGTCGAGGGCCACTGCAACGGGCTCCTCTTGATCAGGTTCCGCGATCTC GTGGTCAACCCCGCCACGCGATGGTGGGATCGCTTGCCCCCGCGCCCGCTGCCGCGCGAC GAGATGGACCGCATCGACGCCGCCTACCTCGTCTTCGATCCCGCAGTGTCCCCGCGGCAC TACGAGGTGTTCTTGACCCCATCGTTCCGCTGGAAAAGCGAATCGGAGAAAGCCGAATTG GACCCCATGGTGGAGGCATCGGAATGGCCACCGGAATCATACACACTGCCCGTCTTCTCG TCGAGGACAGGGCTGTGGCAAGAGAGGAGTTTCATCCGTCAGGGACAAGCCGCAGGCACC ATCGCCGACATGCGATCGGATTGGGCATCGGACCAAAGGAATGGTGTCTATTGGCGAGGA GCATTGTACGTTCATTGTCAGACTAATTTTGTTATCAGAATATCGTTGAATGATGACAAG TACCAAGTAATTAAACCACCAGAGTACTCCGGCCGCTACCTCAACTTTTATCTTGGGAGG TCAGAGAAGGGTGTATACCTTGCATTATCCAGAGACAACTGTCTTAAAGTTTGGATTCTT GATGAAACATGTAGCAAAATGAAGTGGGAGCTCAAGCATGACAAGCACATCAGACATATT CTGCTTGGGCGCAATAATCGACAAGGTCTCGGCCCATGGATTTTACAGGATATCAACCAC CAAAAGAATCCTTATATATATGAATATGATGAAATCATTGAAGCACCCAACCAGAAGAAG GTTGAATGTGAACAAGCAGCATTGGAGAAGTTTGAATGGATCTCAGACGATGAAAATGTT CTTGACAATGAAGATATAGTTACAGGAGGATATCATGAATACATTAATATCATTGGGTTT CATCCATACAAAGAGATAATATTTTTAGACGAATCGTTAAAGAGAGGGCTAGCCTATCAT TTAAGCAGCTCAAAGGTTGAAGATATAGGTAACTTATATCCAACCAACCTTGAATATGAA TTAATTAATGAGCAGTTTATAACCGCTTCTTTTCCATATACACCCTGCTTCATGTGAGGG TTTCTAGAGAAGCTTAAACATCGAAATAAATGACTGTACTCATGTATTCAAATATGTACC TATGAGGATTTGCTCCTCTTTATTAAGAGATATTTTTCAGTTCCTATTCAAATTTTGCTT TTGCTTTCGGTGTGTGCTAGTTGTATTCTAAATCTTTGAAAGGGTGCTCTAGTATCCATC CTATTAGCTACGTTGCTATACATGCATATGGTAATTTCTACTCGTACCTCTGCTTGAATC TCTCTACTATTGATACATGGCATTACCAACTCTTGTCATATTGTGTATCTTTGATTAACA TTGGCATGGATAAGGATAACTCAGTCTTACCTTGCTACTATTGCAGAAACACTGCAGCGT AGAGAGCATGTCTGAATGAGTGAAGGGGAAAAAAAAGACGGTACAAGGAAATAAGGGCTC CTTTGAAATTCATTAATTTTATAATATTTGTACGTAAATTTGTTCGTTTTTTAGAAACTT CTTTGAAAATCCTTCAATCCAGAGAGGTCCGAGTCTCTTCTGAATTCTGAAGGAAAGAAG CATCATGCTGCTCTTTTTTGTTAAGGACTACAAAAATTCCCATGCATTACAGTAGGTGAA GGCTAAATGTATATTTGTTGCCAAAACTTGTTCCTGGTATAATGATATTAGCTCTTAAAC T



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)